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List of works by Lukas A Mueller

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Genome sequencing and analysis of the model grass Brachypodium distachyon

scientific article
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

scientific article published on 12 November 2013
The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community

scientific article
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

scientific article (publication date: 2012)
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.

scientific article
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

scientific article
The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions

scientific article published on 25 November 2012
A draft genome sequence of Nicotiana benthamiana to enhance molecular plant-microbe biology research

scientific article
The SOL Genomics Network: a comparative resource for Solanaceae biology and beyond

scientific article published on July 2005
Combining bioinformatics and phylogenetics to identify large sets of single-copy orthologous genes (COSII) for comparative, evolutionary and systematic studies: a test case in the euasterid plant clade

scientific article
The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl

scientific article
MetaCyc: a multiorganism database of metabolic pathways and enzymes.

scientific article
The Sol Genomics Network (SGN)--from genotype to phenotype to breeding

scientific article
MetaCyc and AraCyc. Metabolic pathway databases for plant research

scientific article published on May 2005
Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida.

scientific article published on 27 May 2016
The Genome Database for Rosaceae (GDR): year 10 update

scientific article
Creation of a genome-wide metabolic pathway database for Populus trichocarpa using a new approach for reconstruction and curation of metabolic pathways for plants

scientific article published on 03 June 2010
Euchromatin and pericentromeric heterochromatin: comparative composition in the tomato genome

scientific article
The Tomato Sequencing Project, the first cornerstone of the International Solanaceae Project (SOL).

scientific article published on January 2005
Coffee and tomato share common gene repertoires as revealed by deep sequencing of seed and cherry transcripts

scientific article (publication date: December 2005)
Floral gene resources from basal angiosperms for comparative genomics research

scientific article
TobEA: an atlas of tobacco gene expression from seed to senescence

scientific article
An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics: application to Drosophila melanogaster Kc167 cells

scientific article published on 19 February 2007
Genes conserved for arbuscular mycorrhizal symbiosis identified through phylogenomics.

scientific article published on 18 January 2016
Dynamic Maize Responses to Aphid Feeding Are Revealed by a Time Series of Transcriptomic and Metabolomic Assays

scientific article published on 16 September 2015
Querying and computing with BioCyc databases

scientific article
Fern genomes elucidate land plant evolution and cyanobacterial symbioses

article
A dynamic interface for capsaicinoid systems biology

scientific article published on 24 June 2009
Enabling proteomic studies with RNA‐Seq: The proteome of tomato pollen as a test case

scientific article published on March 1, 2012
High-resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening.

scientific article
The SGN VIGS tool: user-friendly software to design virus-induced gene silencing (VIGS) constructs for functional genomics.

scientific article published on 30 December 2014
De novo assembly of the zucchini genome reveals a whole-genome duplication associated with the origin of the Cucurbita genus.

scientific article published on 7 November 2017
A community-based annotation framework for linking solanaceae genomes with phenomes

scientific article (publication date: August 2008)
Deciphering the complex leaf transcriptome of the allotetraploid species Nicotiana tabacum: a phylogenomic perspective

scientific article
Analysis of Ultra Low Genome Conservation in Clostridium difficile

scientific article published on December 8, 2010
Comparative BAC end sequence analysis of tomato and potato reveals overrepresentation of specific gene families in potato

scientific article
The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data

scientific article
The SGN comparative map viewer

scientific article published on 17 January 2008
EST database for early flower development in California poppy (Eschscholzia californica Cham., Papaveraceae) tags over 6,000 genes from a basal eudicot

scientific article published on 17 August 2006
The Tomato Expression Atlas.

scientific article published on 30 March 2017
The tomato kinome and the tomato kinase library ORFeome: novel resources for the study of kinases and signal transduction in tomato and solanaceae species

scientific article
An Endophyte Constructs Fungicide-Containing Extracellular Barriers for Its Host Plant.

scientific article
Rapid defense responses in maize leaves induced by Spodoptera exigua caterpillar feeding.

scientific article published in July 2017
Single copy nuclear gene analysis of polyploidy in wild potatoes (Solanum section Petota)

scientific article published on May 24, 2012
Combining 'omics and microscopy to visualize interactions between the Asian citrus psyllid vector and the Huanglongbing pathogen Candidatus Liberibacter asiaticus in the insect gut.

scientific article
Analysis of wild-species introgressions in tomato inbreds uncovers ancestral origins

scientific article
The 'PUCE CAFE' Project: the first 15K coffee microarray, a new tool for discovering candidate genes correlated to agronomic and quality traits

scientific article
Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community

scientific article published in January 2017
Comparative genomics and phylogenetic discordance of cultivated tomato and close wild relatives

scientific article published on 26 February 2015
Genetic structure of the four wild tomato species in the Solanum peruvianum s.l. species complex

scientific article published on May 5, 2014

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