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List of works by Lukas A Mueller

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Comprehensive repeatome annotation reveals strong potential impact of repetitive elements on tomato ripening

scientific article
An acorn squash (Cucurbita pepo ssp. ovifera) fruit and seed transcriptome as a resource for the study of fruit traits in Cucurbita

scientific article published on January 28, 2015
Association analysis for disease resistance to Fusarium oxysporum in cape gooseberry (Physalis peruviana L).

scientific article
Transcriptomic Analysis of L. Roots during the Early Infection Process.

scientific article published on March 2017
Differential regulation of caffeine metabolism in Coffea arabica (Arabica) and Coffea canephora (Robusta)

scientific article published on September 24, 2014
Structure and Distribution of Centromeric Retrotransposons at Diploid and Allotetraploid Coffea Centromeric and Pericentromeric Regions.

scientific article published on 15 February 2018
BrAPI-an application programming interface for plant breeding applications

scientific article published on 01 October 2019
Sequencing-Based Bin Map Construction of a Tomato Mapping Population, Facilitating High-Resolution Quantitative Trait Loci Detection

scientific article published on 01 March 2019
Diversification of R2R3-MYB Transcription Factors in the Tomato Family Solanaceae

scientific article published on 30 June 2016
From manual curation to visualization of gene families and networks across Solanaceae plant species

scientific article published on 15 May 2013
Transcriptomics reveals multiple resistance mechanisms against cotton leaf curl disease in a naturally immune cotton species, Gossypium arboreum

scientific article
solQTL: a tool for QTL analysis, visualization and linking to genomes at SGN database

scientific article published on October 21, 2010
A quick guide for student-driven community genome annotation

scientific article published on 03 April 2019
PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens

scientific article published on 12 November 2019
solGS: a web-based tool for genomic selection

scientific article
Linking the potato genome to the conserved ortholog set (COS) markers

scientific article
De-novo assembly of zucchini genome reveals a whole genome duplication associated with the origin of theCucurbitagenus

article published in 2017
Metabolic profiles of six African cultivars of cassava (Manihot esculenta Crantz) highlight bottlenecks of root yield

scientific article published on 17 January 2020
Linkage between the I-3 gene for resistance to Fusarium wilt race 3 and increased sensitivity to bacterial spot in tomato

scientific article published on 6 October 2017
Dissecting Tissue-Specific Transcriptomic Responses from Leaf and Roots under Salt Stress in Petunia hybrida Mitchell.

scientific article published on 3 August 2017
Molecular insight into cotton leaf curl geminivirus disease resistance in cultivated cotton (Gossypium hirsutum)

scientific article published on 30 September 2019
Independent evolution of ancestral and novel defenses in a genus of toxic plants (Erysimum, Brassicaceae)

scientific article published on 07 April 2020
SolCyc: a database hub at the Sol Genomics Network (SGN) for the manual curation of metabolic networks in Solanum and Nicotiana specific databases

scientific article
The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems

scientific article published on 25 September 2020
Exploiting the diversity of tomato: the development of a phenotypically and genetically detailed germplasm collection

scientific article published on 01 May 2020
Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community

scientific article published on 01 January 2019
Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breeding

scientific article published on 16 November 2020
Development on Citrus medica infected with 'Candidatus Liberibacter asiaticus' has sex-specific and -nonspecific impacts on adult Diaphorina citri and its endosymbionts

scientific article published on 06 October 2020
Reinterpretation of 'sperm pump' or 'sperm syringe' function with notes on other male internal reproductive organs in the Asian citrus psyllid, Diaphorina citri (Hemiptera: Liviidae)

scientific article published on 01 January 2020
Current status and impending progress for cassava structural genomics

scientific article published in 2021
Large-scale GWAS using historical data identifies a conserved genetic architecture of cyanogenic glucosides content in cassava (Manihot esculenta Crantz.) root

scientific article published on 08 November 2020
Longitudinal transcriptomic, proteomic, and metabolomic analysis of Citrus limon response to graft inoculation by 'Candidatus Liberibacter asiaticus'

scientific article published on 27 April 2020
Capsidiol-related genes are highly expressed in response to Colletotrichum scovillei during Capsicum annuum fruit development stages

scientific article published on 21 July 2020
The absence of the caffeine synthase gene is involved in the naturally decaffeinated status of Coffea humblotiana, a wild species from Comoro archipelago

scientific article published on 14 April 2021
Correction to: Current status and impending progress for cassava structural genomics

scientific article published in 2021
De Novo Genome Sequence Assembly of Dwarf Coconut (Cocos nucifera L. 'Catigan Green Dwarf') Provides Insights into Genomic Variation Between Coconut Types and Related Palm Species

scientific article published on 08 August 2019
Metabolic networks of the Nicotiana genus in the spotlight: content, progress and outlook

scientific article published on 14 July 2020
A population based expression atlas provides insights into disease resistance and other physiological traits in cassava (Manihot esculenta Crantz)

scientific article published on 07 December 2021
Can Cross-Country Genomic Predictions Be a Reasonable Strategy to Support Germplasm Exchange? – A Case Study With Hydrogen Cyanide in Cassava

scientific article published in 2021
Plant Metabolic Pathways in MetaCyc and SolCyc

article
Comparative genomics of muskmelon reveals a potential role for retrotransposons in the modification of gene expression

scientific article published on 13 August 2020
Natural variation in stress response gene activity in the allopolyploid Arabidopsis suecica

scientific article published on 23 August 2017
Comprehensive genotyping of a Brazilian cassava (Manihot esculenta Crantz) germplasm bank: insights into diversification and domestication

scientific article published in 2021
Breedbase: a digital ecosystem for modern plant breeding

scientific article published in 2022
Draft Genome Sequence Resource of the Citrus Stem-End Rot Fungal Pathogen Lasiodiplodia theobromae CITRA15

scientific article published on 15 November 2020
Asian citrus psyllid stylet morphology and applicability to the model for inter-instar stylet replacement in the potato psyllid

scientific article published on 14 August 2018
Graph pangenome captures missing heritability and empowers tomato breeding

scientific article published on 08 June 2022
Comparative analysis of Cucurbita pepo metabolism throughout fruit development in acorn squash and oilseed pumpkin

scientific article published on 21 September 2016
Longitudinal Transcriptomic, Proteomic, and Metabolomic Analyses of Citrus sinensis (L.) Osbeck Graft-Inoculated with "Candidatus Liberibacter asiaticus"

scientific article published on 15 January 2020
High density genotype storage for plant breeding in the Chado schema of Breedbase

scientific article published on 11 November 2020

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