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List of works by Marina Marcet-Houben

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Acquisition of prokaryotic genes by fungal genomes

article
PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome

scientific article
Beyond the Whole-Genome Duplication: Phylogenetic Evidence for an Ancient Interspecies Hybridization in the Baker's Yeast Lineage

scientific article published on August 7, 2015
PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions

scientific article
An expanded evaluation of protein function prediction methods shows an improvement in accuracy

scientific article
Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi

scientific article
Comparative genomics of emerging pathogens in the Candida glabrata clade

scientific article
Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies

scientific article
Systematic phenotyping of a large-scale Candida glabrata deletion collection reveals novel antifungal tolerance genes

scientific article (publication date: June 2014)
Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus

scientific article
Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication

scientific article
Genome, Transcriptome, and Functional Analyses of Penicillium expansum Provide New Insights Into Secondary Metabolism and Pathogenicity

scientific article
Genome sequence of the olive tree, Olea europaea

scientific article
The tree versus the forest: the fungal tree of life and the topological diversity within the yeast phylome

scientific article
The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution

scientific article
Regulation of Candida glabrata oxidative stress resistance is adapted to host environment.

scientific article published on 13 December 2010
The genome of wine yeast Dekkera bruxellensis provides a tool to explore its food-related properties

scientific article published on 14 May 2012
Whole genome sequencing of turbot (Scophthalmus maximus; Pleuronectiformes): a fish adapted to demersal life

scientific article published on 06 March 2016
Adaptation of S. cerevisiae to fermented food environments reveals remarkable genome plasticity and the footprints of domestication.

scientific article
Gene flow contributes to diversification of the major fungal pathogen Candida albicans

scientific article
Gene expansion shapes genome architecture in the human pathogen Lichtheimia corymbifera: an evolutionary genomics analysis in the ancient terrestrial mucorales (Mucoromycotina)

scientific article
Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx

scientific article
Phylogenomics of the oxidative phosphorylation in fungi reveals extensive gene duplication followed by functional divergence

scientific article
The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest

scientific article
The pea aphid phylome: a complete catalogue of evolutionary histories and arthropod orthology and paralogy relationships for Acyrthosiphon pisum genes

scientific article published in March 2010
Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts

scientific article published on 25 June 2015
TreeKO: a duplication-aware algorithm for the comparison of phylogenetic trees

scientific article
Complete DNA sequence of Kuraishia capsulata illustrates novel genomic features among budding yeasts (Saccharomycotina)

scientific article
Genome sequencing and secondary metabolism of the postharvest pathogen Penicillium griseofulvum

scientific article published on 5 January 2016
The Schistosoma mansoni phylome: using evolutionary genomics to gain insight into a parasite's biology

scientific article
Evolutionary genomics of yeast pathogens in the Saccharomycotina.

scientific article published on 3 August 2016
A study of the DNA damage checkpoint in Candida albicans: uncoupling of the functions of Rad53 in DNA repair, cell cycle regulation and genotoxic stress-induced polarized growth

scientific article
Genetically encodable bioluminescent system from fungi

article published in the Proceedings of the National Academy of Sciences of the United States of America
Quest for Orthologs Entails Quest for Tree of Life: In Search of the Gene Stream

scientific article published in July 2015
Contrasting Genomic Diversity in Two Closely Related Postharvest Pathogens: Penicillium digitatum and Penicillium expansum

scientific article published on 14 December 2015
Horizontal acquisition of toxic alkaloid synthesis in a clade of plant associated fungi

scientific article published on December 10, 2015
Evolutionary histories of expanded peptidase families in Schistosoma mansoni

scientific article published in 2011
Widespread Inter- and Intra-Domain Horizontal Gene Transfer of d-Amino Acid Metabolism Enzymes in Eukaryotes

scientific article
Towards reconstructing a metabolic tree of life.

scientific article published on 11 December 2007
Phylogenomics Identifies an Ancestral Burst of Gene Duplications Predating the Diversification of Aphidomorpha

scientific article published on 01 March 2020
Phylogenomics of the olive tree (Olea europaea) reveals the relative contribution of ancient allo- and autopolyploidization events.

scientific article published on 25 January 2018
Parental origin of the allotetraploid tobacco Nicotiana benthamiana

scientific article published on 12 December 2019
Evolutionary and functional patterns of shared gene neighbourhood in fungi

scientific article published on 16 September 2019
The complete mitochondrial DNA of the silky shark (Carcharhinus falciformis).

scientific article published on 22 January 2014
Functional Characterization of Clinical Isolates of the Opportunistic Fungal Pathogen Aspergillus nidulans

scientific article published on 08 April 2020
Genomic evidence for recurrent genetic admixture during the domestication of Mediterranean olive trees (Olea europaea L.).

scientific article published on 26 October 2020
Regulatory Mechanisms of a Highly Pectinolytic Mutant of Penicillium occitanis and Functional Analysis of a Candidate Gene in the Plant Pathogen Fusarium oxysporum

scientific article published on 8 September 2017
Corrigendum: Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts

scientific article published on 30 July 2015
EvolClust: automated inference of evolutionary conserved gene clusters in eukaryotes

scientific article published on 01 February 2020
The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest

scientific article published on 23 July 2020

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