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List of works by Karsten Rippe

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Force spectroscopy of chromatin fibers: extracting energetics and structural information from Monte Carlo simulations

scientific article published on 3 February 2011
X-ray crystal structure of Saccharomyces cerevisiae Pdx1 provides insights into the oligomeric nature of PLP synthases

scientific article
Association states of nucleosome assembly protein 1 and its complexes with histones

scientific article published on 31 January 2005
Specificity mechanisms in the control of transcription

scientific article published on April 1996
Telomere dysfunction and chromothripsis

scientific article published on 9 February 2016
Heterochromatin Protein 1β (HP1β) has distinct functions and distinct nuclear distribution in pluripotent versus differentiated cells

scientific article
Helix-coil transition of parallel-stranded DNA. Thermodynamics of hairpin and linear duplex oligonucleotides

scientific article published in November 1989
The hydrogen-bonding structure in parallel-stranded duplex DNA is reverse Watson-Crick

scientific article published on 01 March 1991
A lattice model for transcription factor access to nucleosomal DNA.

scientific article published on October 2010
Spectroscopic properties and helical stabilities of 25-nt parallel-stranded linear DNA duplexes

scientific article published on 01 November 1989
The effect of the DNA conformation on the rate of NtrC activated transcription of Escherichia coli RNA polymerase.sigma(54) holoenzyme

scientific article published on 01 July 2000
Aurora Kinase B Regulates Telomerase Activity via a Centromeric RNA in Stem Cells

scientific article published on 4 June 2015
Exploring the conformational space of chromatin fibers and their stability by numerical dynamic phase diagrams

scientific article
Dynamic properties of independent chromatin domains measured by correlation spectroscopy in living cells

scientific article published on 24 December 2016
Modeling nucleosome position distributions from experimental nucleosome positioning maps

scientific article published on 11 July 2013
NucTools: analysis of chromatin feature occupancy profiles from high-throughput sequencing data

scientific article
Scanning force microscopy of Escherichia coli RNA polymerase.sigma54 holoenzyme complexes with DNA in buffer and in air

scientific article published on 01 November 1998
Statistical–mechanical lattice models for protein–DNA binding in chromatin

scientific article published on September 30, 2010
Taking into account nucleosomes for predicting gene expression

scientific article published on March 21, 2013
Increased vitamin D levels at birth and in early infancy increase offspring allergy risk—evidence for involvement of epigenetic mechanisms

article
On the significance of Toc-GTPase homodimers

scientific article
Dissecting the nascent human transcriptome by analysing the RNA content of transcription factories

scientific article
Quantifying transient binding of ISWI chromatin remodelers in living cells by pixel-wise photobleaching profile evolution analysis

scientific article published on November 5, 2012
Binding affinity of Escherichia coli RNA polymerase*sigma54 holoenzyme for the glnAp2, nifH and nifL promoters

scientific article published on September 2002
Calculating transcription factor binding maps for chromatin.

scientific article
Analysis of protein mobilities and interactions in living cells by multifocal fluorescence fluctuation microscopy

scientific article published on 19 June 2009
Reactivity of parallel-stranded DNA to chemical modification reagents

scientific article published on 01 October 1990
Establishing epigenetic domains via chromatin-bound histone modifiers

scientific article published on 13 September 2013
A three-dimensional colocalization RNA interference screening platform to elucidate the alternative lengthening of telomeres pathway

scientific article published on 7 June 2011
Parallel-stranded DNA under topological stress: rearrangement of (dA)15.(dT)15 to a d(A.A.T)n triplex

scientific article published on December 1991
Loss of cooperativity of secreted CD40L and increased dose-response to IL4 on CLL cell viability correlates with enhanced activation of NF-kB and STAT6

scientific article published on 27 May 2014
Nucleosome repositioning during differentiation of a human myeloid leukemia cell line

scientific article
The viscoelastic properties of chromatin and the nucleoplasm revealed by scale-dependent protein mobility.

scientific article
Real-time observation of light-controlled transcription in living cells.

scientific article published on 9 November 2017
Regulation of nucleolus assembly by non-coding RNA polymerase II transcripts

scientific article
Affinity, stoichiometry and cooperativity of heterochromatin protein 1 (HP1) binding to nucleosomal arrays

scientific article
Retrieving Chromatin Patterns from Deep Sequencing Data Using Correlation Functions.

scientific article
Changing chromatin fiber conformation by nucleosome repositioning

scientific article
DNA (de)methylation in embryonic stem cells controls CTCF-dependent chromatin boundaries

scientific article published on 04 April 2019
Substrate properties of 25-nt parallel-stranded linear DNA duplexes

scientific article published on 01 November 1989
TelNet - a database for human and yeast genes involved in telomere maintenance

scientific article published on 18 May 2018
Rational design and molecular characterization of a chimaeric response regulator protein.

scientific article
Quantification of telomere features in tumor tissue sections by an automated 3D imaging-based workflow

scientific article
Pheno-seq - linking visual features and gene expression in 3D cell culture systems

scientific article published on 26 August 2019
Isolation of the protein and RNA content of active sites of transcription from mammalian cells

scientific article published on 25 February 2016
Defining the structural requirements for ribose 5-phosphate-binding and intersubunit cross-talk of the malarial pyridoxal 5-phosphate synthase

scientific article published on 17 September 2010
A spherical harmonics intensity model for 3D segmentation and 3D shape analysis of heterochromatin foci.

scientific article published on 17 March 2016
Tethering RNA to chromatin for fluorescence microscopy based analysis of nuclear organization

scientific article published on 14 February 2017
TelomereHunter - in silico estimation of telomere content and composition from cancer genomes

scientific article published on 28 May 2019
Genomic footprints of activated telomere maintenance mechanisms in cancer

scientific article published on 05 February 2020

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