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List of works by Karsten Rippe

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Capturing chromosome conformation

scientific article (publication date: 15 February 2002)
Loss of the abundant nuclear non-coding RNA MALAT1 is compatible with life and development

scientific article published on August 2012
Action at a distance: DNA-looping and initiation of transcription

scientific article published on December 1995
SIRT6 recruits SNF2H to DNA break sites, preventing genomic instability through chromatin remodeling

scientific article
Genome-wide nucleosome positioning during embryonic stem cell development

scientific article
Histone acetylation increases chromatin accessibility

scientific article published on 29 November 2005
Making contacts on a nucleic acid polymer

scientific article published on December 1, 2001
The 4D nucleome: Evidence for a dynamic nuclear landscape based on co-aligned active and inactive nuclear compartments

scientific article
HP1 is involved in regulating the global impact of DNA methylation on alternative splicing

scientific article
Epigenetic upregulation of lncRNAs at 13q14.3 in leukemia is linked to the In Cis downregulation of a gene cluster that targets NF-kB.

scientific article
Transcriptional activation via DNA-looping: visualization of intermediates in the activation pathway of E. coli RNA polymerase x sigma 54 holoenzyme by scanning force microscopy

scientific article published in July 1997
DNMT and HDAC inhibitors induce cryptic transcription start sites encoded in long terminal repeats.

scientific article
Nucleosome repositioning links DNA (de)methylation and differential CTCF binding during stem cell development.

scientific article
A 'loop recapture' mechanism for ACF-dependent nucleosome remodeling

scientific article published on 17 July 2005
NUDT9, a member of the Nudix hydrolase family, is an evolutionarily conserved mitochondrial ADP-ribose pyrophosphatase.

scientific article
Three-dimensional organization of promyelocytic leukemia nuclear bodies

scientific article
TERRA and the state of the telomere

scientific article published on November 1, 2015
Retrieving the intracellular topology from multi-scale protein mobility mapping in living cells.

scientific article
Dynamics of telomeres and promyelocytic leukemia nuclear bodies in a telomerase-negative human cell line

scientific article
Nucleosome geometry and internucleosomal interactions control the chromatin fiber conformation

scientific article published on 22 January 2008
Multiscale analysis of dynamics and interactions of heterochromatin protein 1 by fluorescence fluctuation microscopy

scientific article
Human ISWI chromatin-remodeling complexes sample nucleosomes via transient binding reactions and become immobilized at active sites

scientific article
Suv4-20h2 mediates chromatin compaction and is important for cohesin recruitment to heterochromatin.

scientific article published on 18 April 2013
Chromatin remodelling in mammalian cells by ISWI-type complexes--where, when and why?

scientific article
Dual color localization microscopy of cellular nanostructures.

scientific article
Genome organization: balancing stability and plasticity.

scientific article published on 03 August 2008
Histone H2A C-terminus regulates chromatin dynamics, remodeling, and histone H1 binding

scientific article
Nuclear architecture by RNA.

scientific article published on 24 January 2012
Dissecting DNA-histone interactions in the nucleosome by molecular dynamics simulations of DNA unwrapping.

scientific article
The effect of internucleosomal interaction on folding of the chromatin fiber

scientific article published on 25 July 2008
Hypermutation of the inactive X chromosome is a frequent event in cancer

scientific article published on 17 October 2013
NAP1 modulates binding of linker histone H1 to chromatin and induces an extended chromatin fiber conformation

scientific article published on 16 August 2005
Mobility of multi-subunit complexes in the nucleus: accessibility and dynamics of chromatin subcompartments.

scientific article
Association states of the transcription activator protein NtrC from E. coli determined by analytical ultracentrifugation.

scientific article
Superhelix dimensions of a 1868 base pair plasmid determined by scanning force microscopy in air and in aqueous solution.

scientific article published on May 1997
De novo assembly of a PML nuclear subcompartment occurs through multiple pathways and induces telomere elongation

scientific article
Integrative genomic and transcriptomic analysis of leiomyosarcoma.

scientific article published on 10 January 2018
Structure and function of the hetero-oligomeric cysteine synthase complex in plants

scientific article published on 18 August 2010
High-precision structural analysis of subnuclear complexes in fixed and live cells via spatially modulated illumination (SMI) microscopy

scientific article
Biochemical characterization and mass spectrometric disulfide bond mapping of periplasmic alpha-amylase MalS of Escherichia coli.

scientific article published on August 1997
Binding kinetics of human ISWI chromatin-remodelers to DNA repair sites elucidate their target location mechanism

scientific article published on March 1, 2011
Assembly and mobility of exon-exon junction complexes in living cells

scientific article published on 26 March 2009
Dynamic organization of the cell nucleus.

scientific article published on 24 October 2007
PML induces compaction, TRF2 depletion and DNA damage signaling at telomeres and promotes their alternative lengthening

scientific article published on 23 April 2015
Simultaneous binding of two DNA duplexes to the NtrC-enhancer complex studied by two-color fluorescence cross-correlation spectroscopy.

scientific article published on March 2000
Targeting chromatin remodelers: signals and search mechanisms.

scientific article published on 16 June 2011
Coding RNAs with a non-coding function: maintenance of open chromatin structure

scientific article published on September 2011
Dissecting chromatin interactions in living cells from protein mobility maps.

scientific article published in January 2011
Parallel-stranded duplex DNA containing blocks of trans purine-purine and purine-pyrimidine base pairs

scientific article published on August 1994
DNA binding and oligomerization of NtrC studied by fluorescence anisotropy and fluorescence correlation spectroscopy

scientific article

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