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List of works by Laxmi Parida

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The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color

scientific article
Neolithic mitochondrial haplogroup H genomes and the genetic origins of Europeans

scientific article
In silico pattern-based analysis of the human cytomegalovirus genome

scientific article
Enhancing Next-Generation Sequencing-Guided Cancer Care Through Cognitive Computing

scientific article published on 20 November 2017
Liquid versus tissue biopsy for detecting acquired resistance and tumor heterogeneity in gastrointestinal cancers

scientific article published on 09 September 2019
Population Differentiation of Southern Indian Male Lineages Correlates with Agricultural Expansions Predating the Caste System

scientific article published on November 28, 2012
Evaluation of methods for de novo genome assembly from high-throughput sequencing reads reveals dependencies that affect the quality of the results

scientific article (publication date: 2011)
Dictionary-driven protein annotation

scientific article published on September 2002
Estimating the ancestral recombinations graph (ARG) as compatible networks of SNP patterns

scientific article published in November 2008
Comparing sequencing assays and human-machine analyses in actionable genomics for glioblastoma

scientific article
Recombination gives a new insight in the effective population size and the history of the old world human populations

scientific article published in September 2011
Genome-wide signatures of male-mediated migration shaping the Indian gene pool

scientific article (publication date: 21 May 2015)
Novel applications of multitask learning and multiple output regression to multiple genetic trait prediction

scientific article published on June 2016
Variant analysis of SARS-CoV-2 genomes

scientific article published on 02 June 2020
Application of Genome Wide Association and Genomic Prediction for Improvement of Cacao Productivity and Resistance to Black and Frosty Pod Diseases

scientific article published on 14 November 2017
Data-driven encoding for quantitative genetic trait prediction

scientific article published on February 18, 2015
Sequencing of a QTL-rich region of the Theobroma cacao genome using pooled BACs and the identification of trait specific candidate genes

scientific article
Ancestral Recombinations Graph: A Reconstructability Perspective Using Random-Graphs Framework

scientific article published on October 1, 2010
Emergence of Drift Variants That May Affect COVID-19 Vaccine Development and Antibody Treatment

scientific article published on 26 April 2020
Assessing pooled BAC and whole genome shotgun strategies for assembly of complex genomes.

scientific article
Mining, compressing and classifying with extensible motifs

scientific article
Variable-Selection Emerges on Top in Empirical Comparison of Whole-Genome Complex-Trait Prediction Methods

scientific article published on October 6, 2015
A new method to reconstruct recombination events at a genomic scale

scientific article
IPED: inheritance path-based pedigree reconstruction algorithm using genotype data

scientific article
IRiS: construction of ARG networks at genomic scales

scientific article published on 15 July 2011
Efficient algorithms for polyploid haplotype phasing

scientific article published on 9 May 2018
iXora: exact haplotype inferencing and trait association.

scientific article
Watson for Genomics: Moving Personalized Medicine Forward

scientific article
Minimizing recombinations in consensus networks for phylogeographic studies

scientific article
Gapped permutation pattern discovery for gene order comparisons

scientific article published in January 2007
Incremental paradigms of motif discovery

scientific article published in January 2004
Comparative exomics of Phalaris cultivars under salt stress

scientific article
VARUN: Discovering Extensible Motifs under Saturation Constraints

scientific article published on October 1, 2010
BAC sequencing using pooled methods

scientific article
Efficient Algorithms for Sequence Analysis with Entropic Profiles

scientific article published on 21 October 2016
Discovering topological motifs using a compact notation

scientific article published in April 2007
Gene proximity analysis across whole genomes via PQ trees.

scientific article published in December 2005
Does encoding matter? A novel view on the quantitative genetic trait prediction problem

scientific article
Using PQ structures for genomic rearrangement phylogeny

scientific article published in December 2006
Conservative extraction of over-represented extensible motifs

scientific article published in June 2005
A minimal descriptor of an ancestral recombinations graph

scientific article
ARG-based genome-wide analysis of cacao cultivars.

scientific article
Constructing near-perfect phylogenies with multiple homoplasy events

scientific article published in July 2006
Combinatorial pattern discovery approach for the folding trajectory analysis of a beta-hairpin

scientific article
MINT: Mutual Information Based Transductive Feature Selection for Genetic Trait Prediction

scientific article published on May 2016
Analysis on GENIE reveals novel recurrent variants that affect molecular diagnosis of sizable number of cancer patients

scientific article published on 01 February 2019
Evaluating Clinical Genome Sequence Analysis by Watson for Genomics

scientific article published on 09 November 2018
Recombination networks as genetic markers in a human variation study of the Old World

scientific article
EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets

scientific article published on 15 March 2021
Sequencing and curation strategies for identifying candidate glioblastoma treatments

scientific article published on 25 April 2019

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