List of works - Jose C Clemente

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

scientific article (publication date: September 2013)

Gut microbiota from twins discordant for obesity modulate metabolism in mice

scientific article (publication date: 6 September 2013)

Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans

scientific article (publication date: 20 May 2011)

The long-term stability of the human gut microbiota

scientific article

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

2012 scientific article

Cohabiting family members share microbiota with one another and with their dogs

scientific article

The microbiome of uncontacted Amerindians

scientific article published in April 2015

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

scientific article

Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer

scientific article

Transient inability to manage proteobacteria promotes chronic gut inflammation in TLR5-deficient mice

scientific article

The microbiome in early life: implications for health outcomes

scientific article

Enrichment of lung microbiome with supraglottic taxa is associated with increased pulmonary inflammation

scientific article published on July 2013

Simultaneous amplicon sequencing to explore co-occurrence patterns of bacterial, archaeal and eukaryotic microorganisms in rumen microbial communities

scientific article (publication date: 2013)

Reconstructing the microbial diversity and function of pre-agricultural tallgrass prairie soils in the United States

scientific article

Subsistence strategies in traditional societies distinguish gut microbiomes

scientific article

Global biogeography of highly diverse protistan communities in soil

scientific article published on 13 December 2012

The interpersonal and intrapersonal diversity of human-associated microbiota in key body sites

scientific article published in May 2012

Enrichment of the lung microbiome with oral taxa is associated with lung inflammation of a Th17 phenotype.

scientific article published on 04 April 2016

Nurture trumps nature in a longitudinal survey of salivary bacterial communities in twins from early adolescence to early adulthood

scientific article

Host-Protozoan Interactions Protect from Mucosal Infections through Activation of the Inflammasome.

scientific article

Microbiota-driven transcriptional changes in prefrontal cortex override genetic differences in social behavior.

scientific article published on 20 April 2016

Early-life gut microbiome composition and milk allergy resolution

scientific article published on 10 May 2016

Biphasic assembly of the murine intestinal microbiota during early development

scientific article

Distinct cutaneous bacterial assemblages in a sampling of South American Amerindians and US residents

scientific article

Interactions between diet and the intestinal microbiota alter intestinal permeability and colitis severity in mice.

scientific article published on 23 November 2017

Microbiotas from Humans with Inflammatory Bowel Disease Alter the Balance of Gut Th17 and RORγt+ Regulatory T Cells and Exacerbate Colitis in Mice

scientific article

Interplay of host microbiota, genetic perturbations, and inflammation promotes local development of intestinal neoplasms in mice

scientific article

Communities of microbial eukaryotes in the mammalian gut within the context of environmental eukaryotic diversity

scientific article published on 19 June 2014

The role of the gut microbiome in systemic inflammatory disease.

scientific article published on 8 January 2018

Randomised, double-blind, placebo-controlled trial with azithromycin selects for anti-inflammatory microbial metabolites in the emphysematous lung

scientific article

Our microbial selves: what ecology can teach us

scientific article

The lung microbiota in early rheumatoid arthritis and autoimmunity

scientific article

Advancing the microbiome research community

scientific article

Specific Bacteria and Metabolites Associated with Response to Fecal Microbiota Transplantation in Patients with Ulcerative Colitis

scientific article published on 06 December 2018

Changes in vaginal microbiota following antimicrobial and probiotic therapy

scientific article published on August 14, 2015

Anaerobic Bacterial Fermentation Products Increase Tuberculosis Risk in Antiretroviral-Drug-Treated HIV Patients.

scientific article published on 22 March 2017

Gut microbiota density influences host physiology and is shaped by host and microbial factors

scientific article published on 22 January 2019

Can inflammatory bowel disease be permanently treated with short-term interventions on the microbiome?

scientific article published on February 10, 2015

Combined phylogenetic and genomic approaches for the high-throughput study of microbial habitat adaptation

scientific article (publication date: October 2011)

Gut Microbiota Perturbations in Reactive Arthritis and Post-Infectious Spondyloarthritis.

scientific article published on 26 October 2017

Airway Microbiota Is Associated with Upregulation of the PI3K Pathway in Lung Cancer

scientific article published on 01 November 2018

Evaluation of the airway microbiome in nontuberculous mycobacteria disease

scientific article published on 25 October 2018

Infants born to mothers with IBD present with altered gut microbiome that transfers abnormalities of the adaptive immune system to germ-free mice

scientific article published on 29 April 2019

Disease-modifying therapies alter gut microbial composition in MS

scientific article published on 26 October 2018

Engineering the Microbiome: a Novel Approach to Immunotherapy for Allergic and Immune Diseases

scientific article published on July 1, 2015

Diet Modifies Colonic Microbiota and CD4+ T-Cell Repertoire to Induce Flares of Colitis in Mice With Myeloid-Cell Expression of Interleukin 23

scientific article published on 15 June 2018

Microbial Engraftment and Efficacy of Fecal Microbiota Transplant for Clostridium Difficile in Patients With and Without Inflammatory Bowel Disease

scientific article published on 01 May 2019

Gut microbiome of mothers delivering prematurely shows reduced diversity and lower relative abundance of Bifidobacterium and Streptococcus

scientific article published on 25 October 2017

Severe obstructive sleep apnea is associated with alterations in the nasal microbiome and an increase in inflammation

journal article published in 2019

Interleukin-17 Inhibition in Spondyloarthritis Is Associated With Subclinical Gut Microbiome Perturbations and a Distinctive Interleukin-25-Driven Intestinal Inflammation

scientific article published on 12 March 2020

List of works by Jose C Clemente

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

Gut microbiota from twins discordant for obesity modulate metabolism in mice

Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans

The long-term stability of the human gut microbiota

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

Cohabiting family members share microbiota with one another and with their dogs

The microbiome of uncontacted Amerindians

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer

Transient inability to manage proteobacteria promotes chronic gut inflammation in TLR5-deficient mice

The microbiome in early life: implications for health outcomes

Enrichment of lung microbiome with supraglottic taxa is associated with increased pulmonary inflammation

Simultaneous amplicon sequencing to explore co-occurrence patterns of bacterial, archaeal and eukaryotic microorganisms in rumen microbial communities

Reconstructing the microbial diversity and function of pre-agricultural tallgrass prairie soils in the United States

Subsistence strategies in traditional societies distinguish gut microbiomes

Global biogeography of highly diverse protistan communities in soil

The interpersonal and intrapersonal diversity of human-associated microbiota in key body sites

Enrichment of the lung microbiome with oral taxa is associated with lung inflammation of a Th17 phenotype.

Nurture trumps nature in a longitudinal survey of salivary bacterial communities in twins from early adolescence to early adulthood

Host-Protozoan Interactions Protect from Mucosal Infections through Activation of the Inflammasome.

Microbiota-driven transcriptional changes in prefrontal cortex override genetic differences in social behavior.

Early-life gut microbiome composition and milk allergy resolution

Biphasic assembly of the murine intestinal microbiota during early development

Distinct cutaneous bacterial assemblages in a sampling of South American Amerindians and US residents

Interactions between diet and the intestinal microbiota alter intestinal permeability and colitis severity in mice.

Microbiotas from Humans with Inflammatory Bowel Disease Alter the Balance of Gut Th17 and RORγt+ Regulatory T Cells and Exacerbate Colitis in Mice

Interplay of host microbiota, genetic perturbations, and inflammation promotes local development of intestinal neoplasms in mice

Communities of microbial eukaryotes in the mammalian gut within the context of environmental eukaryotic diversity

The role of the gut microbiome in systemic inflammatory disease.

Randomised, double-blind, placebo-controlled trial with azithromycin selects for anti-inflammatory microbial metabolites in the emphysematous lung

Our microbial selves: what ecology can teach us

The lung microbiota in early rheumatoid arthritis and autoimmunity

Advancing the microbiome research community

Specific Bacteria and Metabolites Associated with Response to Fecal Microbiota Transplantation in Patients with Ulcerative Colitis

Changes in vaginal microbiota following antimicrobial and probiotic therapy

Anaerobic Bacterial Fermentation Products Increase Tuberculosis Risk in Antiretroviral-Drug-Treated HIV Patients.

Gut microbiota density influences host physiology and is shaped by host and microbial factors

Can inflammatory bowel disease be permanently treated with short-term interventions on the microbiome?

Combined phylogenetic and genomic approaches for the high-throughput study of microbial habitat adaptation

Gut Microbiota Perturbations in Reactive Arthritis and Post-Infectious Spondyloarthritis.

Airway Microbiota Is Associated with Upregulation of the PI3K Pathway in Lung Cancer

Evaluation of the airway microbiome in nontuberculous mycobacteria disease

Infants born to mothers with IBD present with altered gut microbiome that transfers abnormalities of the adaptive immune system to germ-free mice

Disease-modifying therapies alter gut microbial composition in MS

Engineering the Microbiome: a Novel Approach to Immunotherapy for Allergic and Immune Diseases

Diet Modifies Colonic Microbiota and CD4+ T-Cell Repertoire to Induce Flares of Colitis in Mice With Myeloid-Cell Expression of Interleukin 23

Microbial Engraftment and Efficacy of Fecal Microbiota Transplant for Clostridium Difficile in Patients With and Without Inflammatory Bowel Disease

Gut microbiome of mothers delivering prematurely shows reduced diversity and lower relative abundance of Bifidobacterium and Streptococcus

Severe obstructive sleep apnea is associated with alterations in the nasal microbiome and an increase in inflammation

Interleukin-17 Inhibition in Spondyloarthritis Is Associated With Subclinical Gut Microbiome Perturbations and a Distinctive Interleukin-25-Driven Intestinal Inflammation