List of works - Arndt von Haeseler

IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies

scientific article

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

scientific article (publication date: March 2002)

Ultrafast Approximation for Phylogenetic Bootstrap

scientific article published on February 15, 2013

RETRACTED: TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics

RETRACTED: scientific article

Unexpected complexity of the Wnt gene family in a sea anemone

scientific article

Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices

scientific article (publication date: November 2016)

Genome-wide RNAi screen identifies genes involved in intestinal pathogenic bacterial infection

scientific article

A phylogenomic approach to resolve the arthropod tree of life

scientific article

HaMStR: profile hidden markov model based search for orthologs in ESTs

scientific article

NextGenMap: fast and accurate read mapping in highly polymorphic genomes

scientific article

The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima

scientific article

Central control of fever and female body temperature by RANKL/RANK

scientific article

Decisive data sets in phylogenomics: lessons from studies on the phylogenetic relationships of primarily wingless insects

scientific article (publication date: 2014)

Functional and phylogenetic properties of the pore-forming beta-barrel transporters of the Omp85 family

scientific article

Conserved pore-forming regions in polypeptide-transporting proteins

scientific article

EST sequencing of Onychophora and phylogenomic analysis of Metazoa

scientific article

Gene expression profiling for molecular distinction and characterization of laser captured primary lung cancers

scientific article

The evolution of the ribosome biogenesis pathway from a yeast perspective

scientific article published on 14 November 2013

SLAM-seq defines direct gene-regulatory functions of the BRD4-MYC axis

scientific article

Cooperation of multiple chromatin modifications can generate unanticipated stability of epigenetic States in Arabidopsis

scientific article (publication date: 2010)

Accuracy of phylogeny reconstruction methods combining overlapping gene data sets

scientific article

Rooted triple consensus and anomalous gene trees

scientific article

TonB-dependent transporters and their occurrence in cyanobacteria

scientific article

The genomic basis of circadian and circalunar timing adaptations in a midge

scientific article

Maximum-likelihood analysis using TREE-PUZZLE.

scientific article

State-of the art methodologies dictate new standards for phylogenetic analysis

scientific article

NGC: lossless and lossy compression of aligned high-throughput sequencing data

scientific article published on October 12, 2012

ADAR2 induces reproducible changes in sequence and abundance of mature microRNAs in the mouse brain.

scientific article

Recent origin and cultural reversion of a hunter-gatherer group

scientific article published on 22 February 2005

MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation

scientific article published on 2 February 2018

Taxon Selection under Split Diversity

scientific article

Innate immune response to Streptococcus pyogenes depends on the combined activation of TLR13 and TLR2.

scientific article

Advanced methylome analysis after bisulfite deep sequencing: an example in Arabidopsis.

scientific article

Do we still need supertrees?

scientific article published on February 27, 2012

FACT: functional annotation transfer between proteins with similar feature architectures

scientific article

Phylogenetic diversity within seconds

scientific article published in October 2006

The Candida albicans Histone Acetyltransferase Hat1 Regulates Stress Resistance and Virulence via Distinct Chromatin Assembly Pathways

scientific article

TreeSnatcher: coding trees from images

scientific article

TreeSnatcher plus: capturing phylogenetic trees from images

scientific article

Loss of matK RNA editing in seed plant chloroplasts

scientific article

Shortest triplet clustering: reconstructing large phylogenies using representative sets

scientific article

HvrBase++: a phylogenetic database for primate species

scientific article

Testing substitution models within a phylogenetic tree

scientific article

An exact algorithm for the geodesic distance between phylogenetic trees.

scientific article

Combined transcriptome and proteome profiling reveals specific molecular brain signatures for sex, maturation and circalunar clock phase

scientific article published on 15 February 2019

A SAGE based approach to human glomerular endothelium: defining the transcriptome, finding a novel molecule and highlighting endothelial diversity

scientific article

INVHOGEN: a database of homologous invertebrate genes

scientific article

A human tissue screen identifies a regulator of ER secretion as a brain size determinant

scientific article published on 29 October 2020

Budgeted phylogenetic diversity on circular split systems

scientific article

Timing strains of the marine insect Clunio marinus diverged and persist with gene flow

scientific article published on 07 January 2021

List of works by Arndt von Haeseler

IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

Ultrafast Approximation for Phylogenetic Bootstrap

RETRACTED: TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics

Unexpected complexity of the Wnt gene family in a sea anemone

Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices

Genome-wide RNAi screen identifies genes involved in intestinal pathogenic bacterial infection

A phylogenomic approach to resolve the arthropod tree of life

HaMStR: profile hidden markov model based search for orthologs in ESTs

NextGenMap: fast and accurate read mapping in highly polymorphic genomes

The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima

Central control of fever and female body temperature by RANKL/RANK

Decisive data sets in phylogenomics: lessons from studies on the phylogenetic relationships of primarily wingless insects

Functional and phylogenetic properties of the pore-forming beta-barrel transporters of the Omp85 family

Conserved pore-forming regions in polypeptide-transporting proteins

EST sequencing of Onychophora and phylogenomic analysis of Metazoa

Gene expression profiling for molecular distinction and characterization of laser captured primary lung cancers

The evolution of the ribosome biogenesis pathway from a yeast perspective

SLAM-seq defines direct gene-regulatory functions of the BRD4-MYC axis

Cooperation of multiple chromatin modifications can generate unanticipated stability of epigenetic States in Arabidopsis

Accuracy of phylogeny reconstruction methods combining overlapping gene data sets

Rooted triple consensus and anomalous gene trees

TonB-dependent transporters and their occurrence in cyanobacteria

The genomic basis of circadian and circalunar timing adaptations in a midge

Maximum-likelihood analysis using TREE-PUZZLE.

State-of the art methodologies dictate new standards for phylogenetic analysis

NGC: lossless and lossy compression of aligned high-throughput sequencing data

ADAR2 induces reproducible changes in sequence and abundance of mature microRNAs in the mouse brain.

Recent origin and cultural reversion of a hunter-gatherer group

MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation

Taxon Selection under Split Diversity

Innate immune response to Streptococcus pyogenes depends on the combined activation of TLR13 and TLR2.

Advanced methylome analysis after bisulfite deep sequencing: an example in Arabidopsis.

Do we still need supertrees?

FACT: functional annotation transfer between proteins with similar feature architectures

Phylogenetic diversity within seconds

The Candida albicans Histone Acetyltransferase Hat1 Regulates Stress Resistance and Virulence via Distinct Chromatin Assembly Pathways

TreeSnatcher: coding trees from images

TreeSnatcher plus: capturing phylogenetic trees from images

Loss of matK RNA editing in seed plant chloroplasts

Shortest triplet clustering: reconstructing large phylogenies using representative sets

HvrBase++: a phylogenetic database for primate species

Testing substitution models within a phylogenetic tree

An exact algorithm for the geodesic distance between phylogenetic trees.

Combined transcriptome and proteome profiling reveals specific molecular brain signatures for sex, maturation and circalunar clock phase

A SAGE based approach to human glomerular endothelium: defining the transcriptome, finding a novel molecule and highlighting endothelial diversity

INVHOGEN: a database of homologous invertebrate genes

A human tissue screen identifies a regulator of ER secretion as a brain size determinant

Budgeted phylogenetic diversity on circular split systems

Timing strains of the marine insect Clunio marinus diverged and persist with gene flow