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List of works by Chiara Romualdi

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IDEG6: a web tool for detection of differentially expressed genes in multiple tag sampling experiments.

scientific article published on 15 January 2003
Detection of cortical inflammatory lesions by double inversion recovery magnetic resonance imaging in patients with multiple sclerosis

scientific article
microRNA-181a has a critical role in ovarian cancer progression through the regulation of the epithelial-mesenchymal transition.

scientific article published on January 2014
Life at Depth: Photobacterium profundum Genome Sequence and Expression Analysis

scientific article (publication date: 4 March 2005)
Association between miR-200c and the survival of patients with stage I epithelial ovarian cancer: a retrospective study of two independent tumour tissue collections.

scientific article published on 21 February 2011
Cortical atrophy is relevant in multiple sclerosis at clinical onset.

scientific article published on 14 March 2007
MAGIA, a web-based tool for miRNA and Genes Integrated Analysis

scientific article published on 19 May 2010
Cortical lesion load associates with progression of disability in multiple sclerosis.

scientific article published in October 2012
MAGIA²: from miRNA and genes expression data integrative analysis to microRNA-transcription factor mixed regulatory circuits (2012 update).

scientific article
graphite - a Bioconductor package to convert pathway topology to gene network.

scientific article
miR148b is a major coordinator of breast cancer progression in a relapse-associated microRNA signature by targeting ITGA5, ROCK1, PIK3CA, NRAS, and CSF1.

scientific article published on 11 December 2012
Patterns of human diversity, within and among continents, inferred from biallelic DNA polymorphisms

scientific article (publication date: April 2002)
Resistance to platinum-based chemotherapy is associated with epithelial to mesenchymal transition in epithelial ovarian cancer

article
Widespread cortical thinning characterizes patients with MS with mild cognitive impairment.

scientific article published in January 2010
Along signal paths: an empirical gene set approach exploiting pathway topology.

scientific article published on 21 September 2012
Evidence for relative cortical sparing in benign multiple sclerosis: a longitudinal magnetic resonance imaging study.

scientific article published on 28 August 2008
Ripening and genotype control stilbene accumulation in healthy grapes.

scientific article
Gene expression profiling in dysferlinopathies using a dedicated muscle microarray.

scientific article
Denervation in murine fast-twitch muscle: short-term physiological changes and temporal expression profiling

scientific article published on 13 March 2006
parmigene--a parallel R package for mutual information estimation and gene network reconstruction.

scientific article
Gene expression profiling identifies potential relevant genes in alveolar rhabdomyosarcoma pathogenesis and discriminatesPAX3-FKHR positive and negative tumors

article
Differential gene expression profiling in genetic and multifactorial cardiovascular diseases.

scientific article published on 3 October 2006
Development of mussel mRNA profiling: Can gene expression trends reveal coastal water pollution?

scientific article published on 28 September 2006
Gene set analysis exploiting the topology of a pathway.

scientific article
Cortical pathology in multiple sclerosis patients with epilepsy: a 3 year longitudinal study.

scientific article published on 2 September 2011
MiRNA landscape in stage I epithelial ovarian cancer defines the histotype specificities.

scientific article published on 13 June 2013
MIDAW: a web tool for statistical analysis of microarray data

scientific article
Development and validation of a gene expression oligo microarray for the gilthead sea bream (Sparus aurata).

scientific article
Analysis of differential miRNA expression in primary tumor and stroma of colorectal cancer patients.

scientific article
Graphite Web: web tool for gene set analysis exploiting pathway topology

scientific article published on May 10, 2013
Disentangling the microRNA regulatory milieu in multiple myeloma: integrative genomics analysis outlines mixed miRNA-TF circuits and pathway-derived networks modulated in t(4;14) patients.

scientific article
Inflammatory intrathecal profiles and cortical damage in multiple sclerosis

scientific article published on 8 March 2018
Defining the gene expression signature of rhabdomyosarcoma by meta-analysis.

scientific article published on 7 November 2006
Wiring miRNAs to pathways: a topological approach to integrate miRNA and mRNA expression profiles

scientific article
Identification of high-grade serous ovarian cancer miRNA species associated with survival and drug response in patients receiving neoadjuvant chemotherapy: a retrospective longitudinal analysis using matched tumor biopsies.

scientific article published on 17 January 2016
Longitudinal analysis of immune cell phenotypes in early stage multiple sclerosis: distinctive patterns characterize MRI-active patients.

scientific article published in August 2006
Low degree of cortical pathology is associated with benign course of multiple sclerosis.

scientific article published on 15 October 2012
lncRNAs as Novel Indicators of Patients' Prognosis in Stage I Epithelial Ovarian Cancer: A Retrospective and Multicentric Study.

scientific article
COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses

scientific article published on 19 November 2015
Microsatellite unstable gastrointestinal neuroendocrine carcinomas: a new clinicopathologic entity.

scientific article
Regional Distribution and Evolution of Gray Matter Damage in Different Populations of Multiple Sclerosis Patients

scientific article published on 12 August 2015
A-MADMAN: annotation-based microarray data meta-analysis tool

scientific article published on 29 June 2009
Circulating miRNA landscape identifies miR-1246 as promising diagnostic biomarker in high-grade serous ovarian carcinoma: A validation across two independent cohorts

scientific article published on 22 December 2016
Impact of host genes and strand selection on miRNA and miRNA* expression.

scientific article
Aberrant DNA methylation profiles of inherited and sporadic colorectal cancer.

scientific article
Liver transcriptome analysis in gilthead sea bream upon exposure to low temperature

scientific article
Prognostic relevance of aberrant DNA methylation in g1 and g2 pancreatic neuroendocrine tumors

scientific article published on 05 July 2014
Expression profiling of skeletal muscle in young bulls treated with steroidal growth promoters.

scientific article
Tissue-specific expression and regulatory networks of pig microRNAome

scientific article
Profiling cancer gene mutations in longitudinal epithelial ovarian cancer biopsies by targeted next-generation sequencing: a retrospective study.

scientific article published on 6 April 2015

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