List of works - Attila Csikász-Nagy

Analysis of a generic model of eukaryotic cell-cycle regulation

scientific article

The dynamics of cell cycle regulation.

scientific article

Mathematical model of the fission yeast cell cycle with checkpoint controls at the G1/S, G2/M and metaphase/anaphase transitions

scientific article published on May 5, 1998

Modeling the fission yeast cell cycle: quantized cycle times in wee1- cdc25Delta mutant cells

scientific article published in July 2000

The cell cycle switch computes approximate majority.

scientific article published on 13 September 2012

An insulin-to-insulin regulatory network orchestrates phenotypic specificity in development and physiology

scientific article

Computational systems biology of the cell cycle.

scientific article published on 06 March 2009

Circadian rhythms synchronize mitosis in Neurospora crassa

scientific article published on 13 January 2014

Response dynamics of phosphorelays suggest their potential utility in cell signalling.

scientific article published on 11 August 2010

Models of breast morphogenesis based on localization of stem cells in the developing mammary lobule

scientific article

Stochastic Petri Net extension of a yeast cell cycle model.

scientific article published on 24 July 2008

Spatial segregation of polarity factors into distinct cortical clusters is required for cell polarity control

scientific article

Adaptive dynamics with a single two-state protein

scientific article published on August 2008

Noise Reduction in Complex Biological Switches.

scientific article

Overexpression limits of fission yeast cell-cycle regulators in vivo and in silico.

scientific article

Adaptive Mistranslation Accelerates the Evolution of Fluconazole Resistance and Induces Major Genomic and Gene Expression Alterations in Candida albicans.

scientific article published on July 2017

Time scale and dimension analysis of a budding yeast cell cycle model

scientific article

Minimum criteria for DNA damage-induced phase advances in circadian rhythms.

scientific article

Growth Rate as a Direct Regulator of the Start Network to Set Cell Size

scientific article

Computing with biological switches and clocks

scientific article published on 01 June 2018

Regulating the total level of a signaling protein can vary its dynamics in a range from switch like ultrasensitivity to adaptive responses.

scientific article

Linkers of cell polarity and cell cycle regulation in the fission yeast protein interaction network

scientific article

Module-based construction of plasmids for chromosomal integration of the fission yeast Schizosaccharomyces pombe

scientific article published on June 2015

Dynamics of SIN asymmetry establishment.

scientific article

Transcriptional regulation is a major controller of cell cycle transition dynamics

scientific article (publication date: 2012)

Cooperation and competition in the dynamics of tissue architecture during homeostasis and tumorigenesis.

scientific article published on 08 June 2013

Reverse engineering models of cell cycle regulation.

scientific article published on January 2008

Hsp12p and PAU genes are involved in ecological interactions between natural yeast strains

scientific article published on 16 June 2015

Qualitative and Quantitative Protein Complex Prediction Through Proteome-Wide Simulations

scientific article (publication date: October 2015)

Molecular Network Dynamics of Cell Cycle Control: Transitions to Start and Finish

scientific article published on January 1, 2011

Projecting cell polarity into the next decade.

scientific article published on 23 September 2013

Competition in the chaperone-client network subordinates cell-cycle entry to growth and stress

article

Neurospora crassa as a model organism to explore the interconnected network of the cell cycle and the circadian clock.

scientific article

In vivo and in silico analysis of PCNA ubiquitylation in the activation of the Post Replication Repair pathway in S. cerevisiae

scientific article

Single molecules can operate as primitive biological sensors, switches and oscillators.

scientific article

The effects of an editor serving as one of the reviewers during the peer-review process

scientific article

Molecular Network Dynamics of Cell Cycle Control: Periodicity of Start and Finish

scientific article published on January 2017

Role of Computational Modeling in Understanding Cell Cycle Oscillators

scientific article published on January 2016

Proteostasis collapse, a hallmark of aging, hinders the chaperone-Start network and arrests cells in G1

scientific article published on 13 September 2019

Molecular Filters for Noise Reduction

scientific article published on 01 June 2018

Evolution of opposing regulatory interactions underlies the emergence of eukaryotic cell cycle checkpoints

scientific article published on 27 May 2021

Synthetic Physical Interactions with the Yeast Centrosome

scientific article published on 09 July 2019

Toward Large-Scale Computational Prediction of Protein Complexes

scientific article published on 01 January 2018

Diversity of synaptic protein complexes as a function of the abundance of their constituent proteins: A modeling approach

scientific article published on 18 January 2022

Microsimulation based quantitative analysis of COVID-19 management strategies

scientific article published on 04 January 2022

Computational Models of Cell Cycle Transitions

scientific article published on 01 January 2018

Context-dependent prediction of protein complexes by SiComPre

scientific article published on 17 September 2018

Unifying the mechanism of mitotic exit control in a spatiotemporal logical model

scientific article published on 12 November 2020

Role of mRNA gestation and senescence in noise reduction during the cell cycle

scientific article published on 01 January 2010

Systematic analysis of noise reduction properties of coupled and isolated feed-forward loops

scientific article published on 03 December 2021

List of works by Attila Csikász-Nagy

Analysis of a generic model of eukaryotic cell-cycle regulation

The dynamics of cell cycle regulation.

Mathematical model of the fission yeast cell cycle with checkpoint controls at the G1/S, G2/M and metaphase/anaphase transitions

Modeling the fission yeast cell cycle: quantized cycle times in wee1- cdc25Delta mutant cells

The cell cycle switch computes approximate majority.

An insulin-to-insulin regulatory network orchestrates phenotypic specificity in development and physiology

Computational systems biology of the cell cycle.

Circadian rhythms synchronize mitosis in Neurospora crassa

Response dynamics of phosphorelays suggest their potential utility in cell signalling.

Models of breast morphogenesis based on localization of stem cells in the developing mammary lobule

Stochastic Petri Net extension of a yeast cell cycle model.

Spatial segregation of polarity factors into distinct cortical clusters is required for cell polarity control

Adaptive dynamics with a single two-state protein

Noise Reduction in Complex Biological Switches.

Overexpression limits of fission yeast cell-cycle regulators in vivo and in silico.

Adaptive Mistranslation Accelerates the Evolution of Fluconazole Resistance and Induces Major Genomic and Gene Expression Alterations in Candida albicans.

Time scale and dimension analysis of a budding yeast cell cycle model

Minimum criteria for DNA damage-induced phase advances in circadian rhythms.

Growth Rate as a Direct Regulator of the Start Network to Set Cell Size

Computing with biological switches and clocks

Regulating the total level of a signaling protein can vary its dynamics in a range from switch like ultrasensitivity to adaptive responses.

Linkers of cell polarity and cell cycle regulation in the fission yeast protein interaction network

Module-based construction of plasmids for chromosomal integration of the fission yeast Schizosaccharomyces pombe

Dynamics of SIN asymmetry establishment.

Transcriptional regulation is a major controller of cell cycle transition dynamics

Cooperation and competition in the dynamics of tissue architecture during homeostasis and tumorigenesis.

Reverse engineering models of cell cycle regulation.

Hsp12p and PAU genes are involved in ecological interactions between natural yeast strains

Qualitative and Quantitative Protein Complex Prediction Through Proteome-Wide Simulations

Molecular Network Dynamics of Cell Cycle Control: Transitions to Start and Finish

Projecting cell polarity into the next decade.

Competition in the chaperone-client network subordinates cell-cycle entry to growth and stress

Neurospora crassa as a model organism to explore the interconnected network of the cell cycle and the circadian clock.

In vivo and in silico analysis of PCNA ubiquitylation in the activation of the Post Replication Repair pathway in S. cerevisiae

Single molecules can operate as primitive biological sensors, switches and oscillators.

The effects of an editor serving as one of the reviewers during the peer-review process

Molecular Network Dynamics of Cell Cycle Control: Periodicity of Start and Finish

Role of Computational Modeling in Understanding Cell Cycle Oscillators

Proteostasis collapse, a hallmark of aging, hinders the chaperone-Start network and arrests cells in G1

Molecular Filters for Noise Reduction

Evolution of opposing regulatory interactions underlies the emergence of eukaryotic cell cycle checkpoints

Synthetic Physical Interactions with the Yeast Centrosome

Toward Large-Scale Computational Prediction of Protein Complexes

Diversity of synaptic protein complexes as a function of the abundance of their constituent proteins: A modeling approach

Microsimulation based quantitative analysis of COVID-19 management strategies

Computational Models of Cell Cycle Transitions

Context-dependent prediction of protein complexes by SiComPre

Unifying the mechanism of mitotic exit control in a spatiotemporal logical model

Role of mRNA gestation and senescence in noise reduction during the cell cycle

Systematic analysis of noise reduction properties of coupled and isolated feed-forward loops