List of works - Silvio C.E. Tosatto

InterPro in 2017-beyond protein family and domain annotations

scientific article

The Pfam protein families database in 2019

scholarly article by Sara El-Gebali et al published 24 October 2018 in Nucleic Acids Research

QMEAN: A comprehensive scoring function for model quality assessment.

scientific article

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

article by Alex Mitchell et al published 6 November 2018 in Nucleic Acids Research

ESpritz: accurate and fast prediction of protein disorder

scientific article published on 20 December 2011

The PASTA server for protein aggregation prediction.

scientific article published on 24 August 2007

MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins

scientific article

An expanded evaluation of protein function prediction methods shows an improvement in accuracy

scientific article

PASTA 2.0: an improved server for protein aggregation prediction

scientific article

QMEANclust: estimation of protein model quality by combining a composite scoring function with structural density information.

scientific article

MobiDB: a comprehensive database of intrinsic protein disorder annotations.

scientific article

The RING 2.0 web server for high quality residue interaction networks

scientific article

Evolutionary and structural insights into the multifaceted glutathione peroxidase (Gpx) superfamily.

scientific article

LGI1 mutations in autosomal dominant and sporadic lateral temporal epilepsy.

scientific article published on April 2009

The victor/FRST function for model quality estimation.

scientific article

RING: networking interacting residues, evolutionary information and energetics in protein structures.

scientific article

The catalytic site of glutathione peroxidases.

scientific article published in September 2008

Comprehensive large-scale assessment of intrinsic protein disorder

scientific article published on 21 September 2014

DisProt 7.0: a major update of the database of disordered proteins.

scientific article

Tools and data services registry: a community effort to document bioinformatics resources

scientific article

Ca2+ binding to F-ATP synthase β subunit triggers the mitochondrial permeability transition

scientific article published on 15 May 2017

The thioredoxin specificity of Drosophila GPx: a paradigm for a peroxiredoxin-like mechanism of many glutathione peroxidases.

scientific article published on 13 October 2006

MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins.

scientific article published on 10 November 2017

Global and local model quality estimation at CASP8 using the scoring functions QMEAN and QMEANclust.

scientific article

Fly cryptochrome and the visual system

scientific article published on 27 March 2013

REPETITA: detection and discrimination of the periodicity of protein solenoid repeats by discrete Fourier transform.

scientific article published on June 2009

Heterozygous reelin mutations cause autosomal-dominant lateral temporal epilepsy

scientific article published on June 2015

INGA: protein function prediction combining interaction networks, domain assignments and sequence similarity.

scientific article published on 27 May 2015

The N-terminal half of the receptor domain of botulinum neurotoxin A binds to microdomains of the plasma membrane

scientific article published on 20 January 2009

RepeatsDB: a database of tandem repeat protein structures

scientific article (publication date: 5 December 2013)

NeEMO: a method using residue interaction networks to improve prediction of protein stability upon mutation

scientific article

MOBI: a web server to define and visualize structural mobility in NMR protein ensembles.

scientific article

DisProt 7.0: a major update of the database of disordered proteins

scientific article published on 13 December 2016

MobiDB-lite: fast and highly specific consensus prediction of intrinsic disorder in proteins

scientific article published on May 2017

Functional interaction of phospholipid hydroperoxide glutathione peroxidase with sperm mitochondrion-associated cysteine-rich protein discloses the adjacent cysteine motif as a new substrate of the selenoperoxidase.

scientific article

Bluues server: electrostatic properties of wild-type and mutated protein structures.

scientific article

Inhibitory interaction of the 14-3-3 proteins with ubiquitous (PMCA1) and tissue-specific (PMCA3) isoforms of the plasma membrane Ca2+ pump

scientific journal article

Application of MM/PBSA colony free energy to loop decoy discrimination: toward correlation between energy and root mean square deviation.

scientific article published in April 2005

TAP score: torsion angle propensity normalization applied to local protein structure evaluation.

scientific article

Low density lipoprotein misfolding and amyloidogenesis.

scientific article

Gamma-glutamyl transferase in the cell wall participates in extracellular glutathione salvage from the root apoplast.

scientific article

Simultaneous quantification of protein order and disorder

scientific article published in March 2017

Linear motifs in the C-terminus of D. melanogaster cryptochrome

scientific article published on 9 February 2007

Correct machine learning on protein sequences: a peer-reviewing perspective.

scientific article

FELLS: fast estimator of latent local structure.

scientific article

Familial temporal lobe epilepsy with psychic auras associated with a novel LGI1 mutation.

scientific article published in March 2011

A computational model of the LGI1 protein suggests a common binding site for ADAM proteins.

scientific article

The SSEA server for protein secondary structure alignment.

scientific article

CDKN2A unclassified variants in familial malignant melanoma: combining functional and computational approaches for their assessment.

scientific article published on 21 May 2014

Adding structural information to the von Hippel-Lindau (VHL) tumor suppressor interaction network.

scientific article published on 28 October 2009

List of works by Silvio C.E. Tosatto

InterPro in 2017-beyond protein family and domain annotations

The Pfam protein families database in 2019

QMEAN: A comprehensive scoring function for model quality assessment.

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

ESpritz: accurate and fast prediction of protein disorder

The PASTA server for protein aggregation prediction.

MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins

An expanded evaluation of protein function prediction methods shows an improvement in accuracy

PASTA 2.0: an improved server for protein aggregation prediction

QMEANclust: estimation of protein model quality by combining a composite scoring function with structural density information.

MobiDB: a comprehensive database of intrinsic protein disorder annotations.

The RING 2.0 web server for high quality residue interaction networks

Evolutionary and structural insights into the multifaceted glutathione peroxidase (Gpx) superfamily.

LGI1 mutations in autosomal dominant and sporadic lateral temporal epilepsy.

The victor/FRST function for model quality estimation.

RING: networking interacting residues, evolutionary information and energetics in protein structures.

The catalytic site of glutathione peroxidases.

Comprehensive large-scale assessment of intrinsic protein disorder

DisProt 7.0: a major update of the database of disordered proteins.

Tools and data services registry: a community effort to document bioinformatics resources

Ca2+ binding to F-ATP synthase β subunit triggers the mitochondrial permeability transition

The thioredoxin specificity of Drosophila GPx: a paradigm for a peroxiredoxin-like mechanism of many glutathione peroxidases.

MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins.

Global and local model quality estimation at CASP8 using the scoring functions QMEAN and QMEANclust.

Fly cryptochrome and the visual system

REPETITA: detection and discrimination of the periodicity of protein solenoid repeats by discrete Fourier transform.

Heterozygous reelin mutations cause autosomal-dominant lateral temporal epilepsy

INGA: protein function prediction combining interaction networks, domain assignments and sequence similarity.

The N-terminal half of the receptor domain of botulinum neurotoxin A binds to microdomains of the plasma membrane

RepeatsDB: a database of tandem repeat protein structures

NeEMO: a method using residue interaction networks to improve prediction of protein stability upon mutation

MOBI: a web server to define and visualize structural mobility in NMR protein ensembles.

DisProt 7.0: a major update of the database of disordered proteins

MobiDB-lite: fast and highly specific consensus prediction of intrinsic disorder in proteins

Functional interaction of phospholipid hydroperoxide glutathione peroxidase with sperm mitochondrion-associated cysteine-rich protein discloses the adjacent cysteine motif as a new substrate of the selenoperoxidase.

Bluues server: electrostatic properties of wild-type and mutated protein structures.

Inhibitory interaction of the 14-3-3 proteins with ubiquitous (PMCA1) and tissue-specific (PMCA3) isoforms of the plasma membrane Ca2+ pump

Application of MM/PBSA colony free energy to loop decoy discrimination: toward correlation between energy and root mean square deviation.

TAP score: torsion angle propensity normalization applied to local protein structure evaluation.

Low density lipoprotein misfolding and amyloidogenesis.

Gamma-glutamyl transferase in the cell wall participates in extracellular glutathione salvage from the root apoplast.

Simultaneous quantification of protein order and disorder

Linear motifs in the C-terminus of D. melanogaster cryptochrome

Correct machine learning on protein sequences: a peer-reviewing perspective.

FELLS: fast estimator of latent local structure.

Familial temporal lobe epilepsy with psychic auras associated with a novel LGI1 mutation.

A computational model of the LGI1 protein suggests a common binding site for ADAM proteins.

The SSEA server for protein secondary structure alignment.

CDKN2A unclassified variants in familial malignant melanoma: combining functional and computational approaches for their assessment.

Adding structural information to the von Hippel-Lindau (VHL) tumor suppressor interaction network.