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List of works by Benjamin Bowen

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Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly.

scientific article published on 19 March 2018
Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust

scientific article
Dealing with the unknown: metabolomics and metabolite atlases

scientific article
Widespread adenine N6-methylation of active genes in fungi.

scientific article
Identification of metabolic signatures linked to anti-inflammatory effects of Faecalibacterium prausnitzii

scientific article published on 21 April 2015
Exometabolite niche partitioning among sympatric soil bacteria

scientific article
Deciphering microbial interactions in synthetic human gut microbiome communities.

scientific article
Quantitative tracking of isotope flows in proteomes of microbial communities

scientific article
Metabolite identification in Synechococcus sp. PCC 7002 using untargeted stable isotope assisted metabolite profiling

scientific article published on 14 October 2010
Metabolites associated with adaptation of microorganisms to an acidophilic, metal-rich environment identified by stable-isotope-enabled metabolomics

scientific article published on 12 March 2013
MIDAS: a database-searching algorithm for metabolite identification in metabolomics.

scientific article published on 11 September 2014
OpenMSI: a high-performance web-based platform for mass spectrometry imaging

scientific article
Mass spectrometry imaging for in situ kinetic histochemistry

scientific article published on January 2013
Lineage-specific chromatin signatures reveal a regulator of lipid metabolism in microalgae

scientific article
Mass spectrometry-based metabolomics, analysis of metabolite-protein interactions, and imaging

scientific article
Linking soil biology and chemistry in biological soil crust using isolate exometabolomics.

scientific article published on 2 January 2018
Metabolic footprinting of mutant libraries to map metabolite utilization to genotype

scientific article
Phylogenomically guided identification of industrially relevant GH1 β-glucosidases through DNA synthesis and nanostructure-initiator mass spectrometry

scientific article
Metabolome-proteome differentiation coupled to microbial divergence

scientific article
Untargeted metabolic footprinting reveals a surprising breadth of metabolite uptake and release by Synechococcus sp. PCC 7002.

scientific article published on 21 September 2011
Isolation of a significant fraction of non-phototroph diversity from a desert Biological Soil Crust

scientific article
Belowground Response to Drought in a Tropical Forest Soil. I. Changes in Microbial Functional Potential and Metabolism

scientific article published on 20 April 2016
Analysis of Metabolomics Datasets with High-Performance Computing and Metabolite Atlases

scientific article published on July 20, 2015
"Replica-extraction-transfer" nanostructure-initiator mass spectrometry imaging of acoustically printed bacteria

scientific article
Acoustic deposition with NIMS as a high-throughput enzyme activity assay

scientific article
Dynamic substrate preferences predict metabolic properties of a simple microbial consortium.

scientific article published on 23 January 2017
Stable-isotope probing reveals that hydrogen isotope fractionation in proteins and lipids in a microbial community are different and species-specific.

scientific article published on 5 June 2013
Phosphonium labeling for increasing metabolomic coverage of neutral lipids using electrospray ionization mass spectrometry

scientific article
A robust gene-stacking method utilizing yeast assembly for plant synthetic biology

scientific article
Low-dose ionizing radiation-induced blood plasma metabolic response in a diverse genetic mouse population

scientific article published on 10 October 2012
Cooking shapes the structure and function of the gut microbiome

scientific article published on 30 September 2019
Unraveling heterogeneous susceptibility and the evolution of breast cancer using a systems biology approach

scientific article
High throughput nanostructure-initiator mass spectrometry screening of microbial growth conditions for maximal β-glucosidase production

scientific article
Improved genome annotation through untargeted detection of pathway-specific metabolites

scientific article
Extensive Turnover of Compatible Solutes in Cyanobacteria Revealed by Deuterium Oxide (D2O) Stable Isotope Probing

scientific article published on 9 January 2017
Multivariate analysis of a 3D mass spectral image for examining tissue heterogeneity

scientific article
Application of Black Silicon for Nanostructure-Initiator Mass Spectrometry

scientific article published on 7 January 2016
Taxonomic and Metabolic Incongruence in the Ancient Genus Streptomyces

scientific article published on 20 September 2019
Regulation of Oxygenic Photosynthesis during Trophic Transitions in the Green Alga

scientific article published on 20 February 2019
OpenMSI Arrayed Analysis Toolkit: Analyzing Spatially Defined Samples Using Mass Spectrometry Imaging

scientific article
Untargeted soil metabolomics methods for analysis of extractable organic matter

Development of a High Throughput Platform for Screening Glycoside Hydrolases Based on Oxime-NIMS

scientific article
Microbial Ecology on Solar Panels in Berkeley, CA, United States

scientific article published on 11 December 2018
MAGI: A Method for Metabolite Annotation and Gene Integration

article
Key Metabolites and Mechanistic Changes for Salt Tolerance in an Experimentally Evolved Sulfate-Reducing Bacterium, Desulfovibrio vulgaris.

scientific article published on 14 November 2017
Multilab EcoFAB study shows highly reproducible physiology and depletion of soil metabolites by a model grass

scientific article published on 24 January 2019
Deuterium-exchange metabolomics identifies N-methyl lyso phosphatidylethanolamines as abundant lipids in acidophilic mixed microbial communities

Web of microbes (WoM): a curated microbial exometabolomics database for linking chemistry and microbes

scientific article published on 12 September 2018
CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria

scientific article published on 14 October 2019
Identifying Important Ions and Positions in Mass Spectrometry Imaging Data Using CUR Matrix Decompositions

scientific article published on April 13, 2015

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