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List of works by Goksel Misirli

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The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology.

scientific article
Standard virtual biological parts: a repository of modular modeling components for synthetic biology

scientific article
Proteomic analysis of Bacillus subtilis strains engineered for improved production of heterologous proteins

scientific article published on 27 October 2013
Sharing Structure and Function in Biological Design with SBOL 2.0.

scientific article published on 25 April 2016
SynBioHub: A Standards-Enabled Design Repository for Synthetic Biology

scientific article published on 9 January 2018
A standard-enabled workflow for synthetic biology

scientific article published on June 2017
Model annotation for synthetic biology: automating model to nucleotide sequence conversion

scientific article
Synthetic Biology Open Language (SBOL) Version 2.2.0.

scientific article published on 2 April 2018
A Computational Workflow for the Automated Generation of Models of Genetic Designs

scientific article published on 05 June 2018
Annotation of rule-based models with formal semantics to enable creation, analysis, reuse and visualization

scientific article
Synthetic Biology Open Language (SBOL) Version 2.1.0.

scientific article published on 18 December 2016
Synthetic Biology Open Language (SBOL) Version 2.0.0.

scientific article published on 04 September 2015
BacillusRegNet: a transcriptional regulation database and analysis platform for Bacillus species

scientific article published on 8 July 2014
The SBOL Stack: A Platform for Storing, Publishing, and Sharing Synthetic Biology Designs

scientific article
Proposed data model for the next version of the synthetic biology open language

scientific article
Data Integration and Mining for Synthetic Biology Design

scientific article
Evolutionary computation for the design of a stochastic switch for synthetic genetic circuits

scientific article published in January 2010
The synthetic biology open language

scientific article published on January 2015
SBOL Visual 2 Ontology

scientific article published on 08 April 2020
VisBOL: Web-Based Tools for Synthetic Biology Design Visualization

scientific article published on 25 January 2016
Synthetic biology open language (SBOL) version 3.0.0.

scientific article published on 25 June 2020
ShortBOL: A Language for Scripting Designs for Engineered Biological Systems Using Synthetic Biology Open Language (SBOL)

scientific article published on 23 March 2020
Synthetic Biology Open Language (SBOL) Version 2.3.

scientific article published on 13 June 2019
Synthetic biology open language visual (SBOL visual) version 2.2.

scientific article published on 10 June 2020
A Genetic Circuit Compiler: Generating Combinatorial Genetic Circuits with Web Semantics and Inference

scientific article published on 20 November 2018
SBML Level 3 Package Proposal: Annotation

SBOL-OWL: An Ontological Approach for Formal and Semantic Representation of Synthetic Biology Information

scientific article published on 14 May 2019

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