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List of works by A. Murat Eren

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Anvi'o: an advanced analysis and visualization platform for 'omics data

scientific article
Oligotyping: Differentiating between closely related microbial taxa using 16S rRNA gene data.

scientific article
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

scientific article
Minimum entropy decomposition: unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences

scientific article
A filtering method to generate high quality short reads using illumina paired-end technology

scientific article
Exploring the diversity of Gardnerella vaginalis in the genitourinary tract microbiota of monogamous couples through subtle nucleotide variation.

scientific article
Sewage reflects the microbiomes of human populations.

scientific article
A single genus in the gut microbiome reflects host preference and specificity

scientific article
Ecological succession and stochastic variation in the assembly of Arabidopsis thaliana phyllosphere communities

scientific article published on 21 January 2014
Extensive Modulation of the Fecal Metagenome in Children With Crohn's Disease During Exclusive Enteral Nutrition

scientific article published on 3 November 2015
Discovering new indicators of fecal pollution

scientific article
Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes

scientific article published on 11 June 2018
Sewage reflects the distribution of human faecal Lachnospiraceae.

scientific article
Histamine-2 receptor blockers alter the fecal microbiota in premature infants.

scientific article published in April 2013
Humpback whale populations share a core skin bacterial community: towards a health index for marine mammals?

scientific article
Identifying contamination with advanced visualization and analysis practices: metagenomic approaches for eukaryotic genome assemblies

scientific article
DESMAN: a new tool for de novo extraction of strains from metagenomes.

scientific article published on 21 September 2017
Microbial signals drive pre-leukaemic myeloproliferation in a Tet2-deficient host.

scientific article
Linking pangenomes and metagenomes: the Prochlorococcus metapangenome

scientific article published on 25 January 2018
Bacterial communities in penile skin, male urethra, and vaginas of heterosexual couples with and without bacterial vaginosis

scientific article
Comparison of Sewage and Animal Fecal Microbiomes by Using Oligotyping Reveals Potential Human Fecal Indicators in Multiple Taxonomic Groups

scientific article published on 31 July 2015
Tracking microbial colonization in fecal microbiota transplantation experiments via genome-resolved metagenomics.

scientific article
Reconstructing rare soil microbial genomes using in situ enrichments and metagenomics.

scientific article published on 30 April 2015
Peripartum Antibiotics Promote Gut Dysbiosis, Loss of Immune Tolerance, and Inflammatory Bowel Disease in Genetically Prone Offspring.

scientific article published in July 2017
Recurrent patterns of microdiversity in a temperate coastal marine environment.

scientific article published on 24 October 2017
Genomic variation in microbial populations inhabiting the marine subseafloor at deep-sea hydrothermal vents

scientific article published on 24 October 2017
Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

scientific article published on 08 July 2019
Vaginal microbiome in early pregnancy and subsequent risk of spontaneous preterm birth: a case-control study

scientific article published on 27 June 2018
Dynamics of tongue microbial communities with single-nucleotide resolution using oligotyping.

scientific article
Minimizing confounders and increasing data quality in murine models for studies of the gut microbiome

scientific article published on 12 July 2018
Patient-Specific Bacteroides Genome Variants in Pouchitis

scientific article
Gut microbes contribute to variation in solid organ transplant outcomes in mice.

scientific article published on 25 May 2018
Co-occurring genomic capacity for anaerobic methane and dissimilatory sulfur metabolisms discovered in the Korarchaeota

scientific article published on 04 March 2019
Composite Metagenome-Assembled Genomes Reduce the Quality of Public Genome Repositories

scientific article published on 4 June 2019
A Few Pseudomonas Oligotypes Dominate in the Meat and Dairy Processing Environment

scientific article published on 02 March 2017
SeaBase: a multispecies transcriptomic resource and platform for gene network inference.

scientific article
Accurate and complete genomes from metagenomes

scientific article published on 18 March 2020
B cell superantigens in the human intestinal microbiota

scientific article published on 01 August 2019
Editorial: New Insights into Microbial Ecology through Subtle Nucleotide Variation.

scientific article published on 24 August 2016
Genome reconstructions indicate the partitioning of ecological functions inside a phytoplankton bloom in the Amundsen Sea, Antarctica

scientific article published on 26 October 2015
Single-amino acid variants reveal evolutionary processes that shape the biogeography of a global SAR11 subclade

scientific article published on 03 September 2019
Microbiome characterization by high-throughput transfer RNA sequencing and modification analysis

scientific article published in Nature Communications
Transcriptome-wide reprogramming of N6-methyladenosine modification by the mouse microbiome

scientific article published on 17 December 2018
The Wolbachia mobilome in Culex pipiens includes a putative plasmid

scientific article published on 05 March 2019
Simulations predict microbial responses in the environment? This environment disagrees retrospectively.

scientific article published on 10 October 2017
Author Correction: The Wolbachia mobilome in Culex pipiens includes a putative plasmid

scientific article published on 12 July 2019
Biochemical diversity of glycosphingolipid biosynthesis as a driver of Coccolithovirus competitive ecology

scientific article published on 20 May 2019
DRISEE overestimates errors in metagenomic sequencing data.

scientific article
Droplet-based high-throughput cultivation for accurate screening of antibiotic resistant gut microbes

scientific article published on 17 June 2020
FORENSIC: an Online Platform for Fecal Source Identification

scientific article published on 17 March 2020

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