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List of works by Vera Pancaldi

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Genetic Drivers of Epigenetic and Transcriptional Variation in Human Immune Cells

scientific article
Whole-genome fingerprint of the DNA methylome during human B cell differentiation

scientific article
Systematic screen for mutants resistant to TORC1 inhibition in fission yeast reveals genes involved in cellular ageing and growth.

scientific article
In silico characterization and prediction of global protein-mRNA interactions in yeast

scientific article
Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types

scientific article published on 26 January 2017
AnGeLi: A Tool for the Analysis of Gene Lists from Fission Yeast

scientific article
Predicting the fission yeast protein interaction network

scientific article
Meta-analysis of genome regulation and expression variability across hundreds of environmental and genetic perturbations in fission yeast

scientific article published on 15 December 2009
Integrating epigenomic data and 3D genomic structure with a new measure of chromatin assortativity

scientific article
Higher gene expression variability in the more aggressive subtype of chronic lymphocytic leukemia

scientific article published on January 28, 2015
Stress induces remodelling of yeast interaction and co-expression networks

scientific article published on 7 March 2013
Epigenetic and Transcriptional Variability Shape Phenotypic Plasticity

scientific article published on 18 December 2017
Chromatin Regulators as a Guide for Cancer Treatment Choice

scientific article published on 16 May 2016
Automatic identification of informative regions with epigenomic changes associated to hematopoiesis.

scientific article published on September 2017
ChiCMaxima: a robust and simple pipeline for detection and visualization of chromatin looping in Capture Hi-C

scientific article published on 22 May 2019
A Boolean gene regulatory model of heterosis and speciation

scientific article
Community-wide hackathons to identify central themes in single-cell multi-omics

publication published in 2021
Topology of functional networks predicts physical binding of proteins.

scientific article published on 19 June 2012
Molecular Inverse Comorbidity between Alzheimer's Disease and Lung Cancer: New Insights from Matrix Factorization

scientific article published on 26 June 2019
A Gene Regulatory Network Simulation of Heterosis

article
Interpreting molecular similarity between patients as a determinant of disease comorbidity relationships

scientific article published on 05 June 2020
Automatic identification of informative regions with epigenomic changes associated to hematopoiesis

STAG2 loss-of-function affects short-range genomic contacts and modulates the basal-luminal transcriptional program of bladder cancer cells

scientific article published on 01 November 2021
Wavelet-based upscaling of advection equations

Permeability up-scaling using Haar Wavelets

Insights on TAM Formation from a Boolean Model of Macrophage Polarization Based on In Vitro Studies

scientific article published on 07 December 2020
Biological noise to get a sense of direction: an analogy between chemotaxis and stress response

scientific article published on March 13, 2014
Unveiling new disease, pathway, and gene associations via multi-scale neural network

scientific article published on 06 April 2020
Hierarchical coarse-graining transform

scientific article published on 18 March 2009
Preface to the special issue “Complexity in the Oil Industry 2007”

Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer

article
Abstract LB-155: Epigenetic profiling of chemotherapy sensitivity

Comparative analysis of neutrophil and monocyte epigenomes

Upscaling of the Saturation Equation

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