List of works - Clemens Wrzodek

Path2Models: large-scale generation of computational models from biochemical pathway maps

scientific article

JSBML: a flexible Java library for working with SBML.

scientific article

Precise generation of systems biology models from KEGG pathways

scientific article (publication date: 21 February 2013)

KEGGtranslator: visualizing and converting the KEGG PATHWAY database to various formats

scientific article (publication date: 15 August 2011)

Integrated enrichment analysis and pathway-centered visualization of metabolomics, proteomics, transcriptomics, and genomics data by using the InCroMAP software

scientific article published on April 25, 2014

Linking the epigenome to the genome: correlation of different features to DNA methylation of CpG islands

scientific article

Ha-ras and β-catenin oncoproteins orchestrate metabolic programs in mouse liver tumors.

scientific article published on 3 March 2014

Qualitative translation of relations from BioPAX to SBML qual

scientific article (publication date: 15 October 2012)

InCroMAP: integrated analysis of cross-platform microarray and pathway data

scientific article published on December 20, 2012

JSBML 1.0: providing a smorgasbord of options to encode systems biology models

scientific article

A toxicogenomic approach for the prediction of murine hepatocarcinogenesis using ensemble feature selection

scientific article

Integrative pathway-based approach for genome-wide association studies: identification of new pathways for rheumatoid arthritis and type 1 diabetes

scientific article

Parkinson's disease: dopaminergic nerve cell model is consistent with experimental finding of increased extracellular transport of α-synuclein.

scientific article

TFpredict and SABINE: sequence-based prediction of structural and functional characteristics of transcription factors

scientific article

Evaluation of toxicogenomics approaches for assessing the risk of nongenotoxic carcinogenicity in rat liver

scientific article

Pathway-based visualization of cross-platform microarray datasets

scientific article

ZBIT Bioinformatics Toolbox: A Web-Platform for Systems Biology and Expression Data Analysis

scientific article

List of works by Clemens Wrzodek

Path2Models: large-scale generation of computational models from biochemical pathway maps

JSBML: a flexible Java library for working with SBML.

Precise generation of systems biology models from KEGG pathways

KEGGtranslator: visualizing and converting the KEGG PATHWAY database to various formats

Integrated enrichment analysis and pathway-centered visualization of metabolomics, proteomics, transcriptomics, and genomics data by using the InCroMAP software

Linking the epigenome to the genome: correlation of different features to DNA methylation of CpG islands

Ha-ras and β-catenin oncoproteins orchestrate metabolic programs in mouse liver tumors.

Qualitative translation of relations from BioPAX to SBML qual

InCroMAP: integrated analysis of cross-platform microarray and pathway data

JSBML 1.0: providing a smorgasbord of options to encode systems biology models

A toxicogenomic approach for the prediction of murine hepatocarcinogenesis using ensemble feature selection

Integrative pathway-based approach for genome-wide association studies: identification of new pathways for rheumatoid arthritis and type 1 diabetes

Parkinson's disease: dopaminergic nerve cell model is consistent with experimental finding of increased extracellular transport of α-synuclein.

TFpredict and SABINE: sequence-based prediction of structural and functional characteristics of transcription factors

Evaluation of toxicogenomics approaches for assessing the risk of nongenotoxic carcinogenicity in rat liver

Pathway-based visualization of cross-platform microarray datasets

ZBIT Bioinformatics Toolbox: A Web-Platform for Systems Biology and Expression Data Analysis

JSBML: a flexible and entirely Java-based library for working with SBML

JSBML: a flexible and entirely Java-based library for working with SBML