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List of works by Daniel S. Rokhsar

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The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

scientific article
Phytozome: a comparative platform for green plant genomics

scientific article (publication date: 2012)
The Chlamydomonas genome reveals the evolution of key animal and plant functions

scientific article
The Sorghum bicolor genome and the diversification of grasses

scientific article
Community structure and metabolism through reconstruction of microbial genomes from the environment

scientific article (publication date: 4 March 2004)
The Draft Genome of Ciona intestinalis: Insights into Chordate and Vertebrate Origins

scientific article
Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization

scientific article
The amphioxus genome and the evolution of the chordate karyotype

scientific article
Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes

scientific article
The Genome of the Diatom Thalassiosira Pseudonana: Ecology, Evolution, and Metabolism

scientific article
The Phaeodactylum genome reveals the evolutionary history of diatom genomes

scientific article
The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans

scientific article
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres

scientific article published in December 2012
The Amphimedon queenslandica genome and the evolution of animal complexity

scientific article
The Trichoplax genome and the nature of placozoans

scientific article
Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

scientific article
Phytophthora Genome Sequences Uncover Evolutionary Origins and Mechanisms of Pathogenesis

scientific article
The genome of the Western clawed frog Xenopus tropicalis

scientific article
Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals

scientific article (publication date: October 2008)
The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution

scientific article
The dynamic genome of Hydra

scientific article
The Selaginella genome identifies genetic changes associated with the evolution of vascular plants

scientific article
A reference genome for common bean and genome-wide analysis of dual domestications

scientific article published on 8 June 2014
The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome

scholarly article
Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78

scientific article
Reference genome sequence of the model plant Setaria

scientific article
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

scientific article
The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation

scientific article
Genomic analysis of organismal complexity in the multicellular green alga Volvox carteri

scientific article
Assemblathon 1: a competitive assessment of de novo short read assembly methods

scientific article
The genome portal of the Department of Energy Joint Genome Institute

scientific article published on 22 November 2011
Genome evolution in the allotetraploid frog Xenopus laevis

scientific article
Reverse methanogenesis: testing the hypothesis with environmental genomics

scientific article published in September 2004
Insights into bilaterian evolution from three spiralian genomes

scientific article
The Genome of Naegleria gruberi Illuminates Early Eukaryotic Versatility

scientific article
The amphioxus genome illuminates vertebrate origins and cephalochordate biology

scientific article
Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism

scientific article
The genome of Eucalyptus grandis

scientific article
Topology of the resonating valence-bond state: Solitons and high- T c superconductivity

scientific article
Chromosome-scale shotgun assembly using an in vitro method for long-range linkage

scientific article published on 4 February 2016
Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication

scientific article (publication date: July 2014)
The DNA sequence and biology of human chromosome 19

scientific article
The Capsella rubella genome and the genomic consequences of rapid mating system evolution

scientific article
Rapid whole-genome mutational profiling using next-generation sequencing technologies

scientific article published on 4 September 2008
The octopus genome and the evolution of cephalopod neural and morphological novelties

scientific article
Genesis and expansion of metazoan transcription factor gene classes

scientific article published on 21 February 2008
Molecular dynamics simulations of unfolding and refolding of a beta-hairpin fragment of protein G

scientific article
Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ).

scientific article
Human chromosome 19 and related regions in mouse: conservative and lineage-specific evolution

scientific article
Promoter elements associated with RNA Pol II stalling in the Drosophila embryo

scholarly article

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