Advanced search

Authors whose works are in public domain in at least one jurisdiction

List of works by Ben C Collins

1-43 of 43 results

View this query on the Wikidata Query Service
OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data

scientific article published in March 2014
Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system

scientific article
A repository of assays to quantify 10,000 human proteins by SWATH-MS.

scientific article
Building high-quality assay libraries for targeted analysis of SWATH MS data

scientific article
Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps

scientific article published on 2 March 2015
Glycoproteomic analysis of prostate cancer tissues by SWATH mass spectrometry discovers N-acylethanolamine acid amidase and protein tyrosine kinase 7 as signatures for tumor aggressiveness.

scientific article
Quantitative variability of 342 plasma proteins in a human twin population

scientific article
Absolute Proteome Composition and Dynamics during Dormancy and Resuscitation of Mycobacterium tuberculosis

scientific article published on 18 June 2015
Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry

scientific article
Data-independent acquisition-based SWATH-MS for quantitative proteomics: a tutorial

scholarly article by Christina Ludwig et al published 13 August 2018 in Molecular Systems Biology
Assessment of a method to characterize antibody selectivity and specificity for use in immunoprecipitation

scientific article published on 29 June 2015
TRIC: an automated alignment strategy for reproducible protein quantification in targeted proteomics

scientific article published on August 2016
Mass spectrometric protein maps for biomarker discovery and clinical research

scientific article published on 21 October 2013
Statistical control of peptide and protein error rates in large-scale targeted data-independent acquisition analyses

scientific article
Quantitative proteomics: challenges and opportunities in basic and applied research

scientific article published on June 2017
mapDIA: Preprocessing and statistical analysis of quantitative proteomics data from data independent acquisition mass spectrometry

scientific article
Identification of a Set of Conserved Eukaryotic Internal Retention Time Standards for Data-independent Acquisition Mass Spectrometry

scientific article
Serum proteomic profiling reveals that pretreatment complement protein levels are predictive of esophageal cancer patient response to neoadjuvant chemoradiation.

scientific article
Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS.

scientific article
Range of protein detection by selected/multiple reaction monitoring mass spectrometry in an unfractionated human cell culture lysate

scientific article published on April 2012
Sequence tagging reveals unexpected modifications in toxicoproteomics

scientific article published on 7 January 2011
Development of a pharmaceutical hepatotoxicity biomarker panel using a discovery to targeted proteomics approach.

scientific article
Elucidation of host-pathogen protein-protein interactions to uncover mechanisms of host cell rewiring.

scientific article published on 11 August 2017
Applications and Developments in Targeted Proteomics: From SRM to DIA/SWATH

scientific article published on 01 August 2016
Complex-centric proteome profiling by SEC-SWATH-MS

In Vivo and in Vitro Proteome Analysis of Human Immunodeficiency Virus (HIV)-1-infected, Human CD4+ T Cells

scientific article
Delayed effects of transcriptional responses in Mycobacterium tuberculosis exposed to nitric oxide suggest other mechanisms involved in survival

scientific article published on 15 August 2017
Use of proteomics for the discovery of early markers of drug toxicity.

scientific article
AP-SWATH reveals direct involvement of VCP/p97 in integrated stress response signaling through facilitating CReP/PPP1R15B degradation

scientific article published on 29 March 2018
diaPASEF: parallel accumulation-serial fragmentation combined with data-independent acquisition

scientific article published on 30 November 2020
Absolute quantification of toxicological biomarkers by multiple reaction monitoring.

scientific article published in January 2011
Systems proteomics approaches to study bacterial pathogens: application to Mycobacterium tuberculosis

scientific article published on 12 October 2017
Precise Temporal Profiling of Signaling Complexes in Primary Cells Using SWATH Mass Spectrometry.

scientific article published on March 2017
Comparative analysis of mRNA and protein degradation in prostate tissues indicates high stability of proteins.

scientific article published on 7 June 2019
Proteomics goes parallel

scientific article published on 01 November 2018
Use of SELDI MS to discover and identify potential biomarkers of toxicity in InnoMed PredTox: a multi-site, multi-compound study

scientific article
Integrating highly quantitative proteomics and genome-scale metabolic modeling to study pH adaptation in the human pathogen Enterococcus faecalis

scientific article published on 08 September 2016
Diagnostics and correction of batch effects in large‐scale proteomic studies: a tutorial

scientific article published in 2021
Complex-centric proteome profiling by SEC-SWATH-MS

Multilayered regulation of autophagy by the Atg1 kinase orchestrates spatial and temporal control of autophagosome formation

scientific article published on 18 November 2021
The protein landscape of chronic lymphocytic leukemia

scientific article published on 16 December 2021
Complex-centric proteome profiling by SEC-SWATH-MS for the parallel detection of hundreds of protein complexes

scientific article published on 20 July 2020
Differential proteomics incorporating iTRAQ labeling and multi-dimensional separations.

scientific article

Paulina is supported by:

About Paulina

Help