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List of works by Ewan Birney

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Initial sequencing and analysis of the human genome

scientific article published on 15 February 2001
Velvet: algorithms for de novo short read assembly using de Bruijn graphs

scientific article
Initial sequencing and comparative analysis of the mouse genome

scientific article
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

scientific article published in June 2007
A Draft Sequence of the Neandertal Genome

scientific article
International network of cancer genome projects

scientific article
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

scientific article
GeneWise and Genomewise

scientific article published in May 2004
The Pfam protein families database

scientific article (publication date: 2002)
The Reactome pathway knowledgebase

scientific article from 2014
Genome sequence of the Brown Norway rat yields insights into mammalian evolution

scientific article
The Genome Sequence of the Malaria Mosquito Anopheles gambiae

scientific article
The Bioperl toolkit: Perl modules for the life sciences

scientific article
Ensembl 2014

scientific article
Automated generation of heuristics for biological sequence comparison

scientific article published in 2005
The Ensembl genome database project

scientific article
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

scientific article (publication date: 5 December 2002)
A small-cell lung cancer genome with complex signatures of tobacco exposure

scientific article
Ensembl 2015

scientific article (publication date: 2015)
Mouse genomic variation and its effect on phenotypes and gene regulation

scientific article (publication date: 14 September 2011)
Oases:robustde novoRNA-seq assembly across the dynamic range of expression levels

scientific article (publication date: 15 April 2012)
Ensembl 2016

scientific article
Evolutionary and Biomedical Insights from the Rhesus Macaque Genome

scientific article
Reactome: a database of reactions, pathways and biological processes

scientific article
The genomic basis of adaptive evolution in threespine sticklebacks

scientific article
The Pfam protein families database.

scientific article
EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

scientific article
Ensembl 2012

scientific article
Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt

scientific article
Genome sequence of Aedes aegypti, a major arbovirus vector

scientific article
Ensembl 2013

scientific article
Reactome: a knowledgebase of biological pathways

scientific article
Landscape of somatic mutations in 560 breast cancer whole-genome sequences

scientific article
Ensembl 2009

scientific article (publication date: 2009)
A high-resolution map of human evolutionary constraint using 29 mammals

scientific article
Ensembl 2011

scientific article
Ensembl 2007

scientific article
Reactome knowledgebase of human biological pathways and processes

scientific article (publication date: 2009)
The InterPro database, an integrated documentation resource for protein families, domains and functional sites

scientific article (publication date: 2001)
Analysis of the RNA-recognition motif and RS and RGG domains: conservation in metazoan pre-mRNA splicing factors

scientific article
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors

scientific article published on September 2012
The BioPAX community standard for pathway data sharing

scientific article (publication date: September 2010)
Immunity-related genes and gene families in Anopheles gambiae

scientific article published in October 2002
Ensembl 2008

scientific article
A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis

scientific article
Genome analysis of the platypus reveals unique signatures of evolution

scientific article
The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes

scientific article
Pfam: multiple sequence alignments and HMM-profiles of protein domains

scientific article published in January 1998
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity

scientific article
Reactome: a knowledge base of biologic pathways and processes

scientific article

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