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List of works by Joel P. Arrais

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Parallel DNA pyrosequencing unveils new zebrafish microRNAs

scientific article
Large scale comparative codon-pair context analysis unveils general rules that fine-tune evolution of mRNA primary structure.

scientific article
From the salivary proteome to the OralOme: comprehensive molecular oral biology

scientific article published on 28 January 2012
Computational prediction of the human-microbial oral interactome

scientific article
Concept-based query expansion for retrieving gene related publications from MEDLINE.

scientific article
OralCard: a bioinformatic tool for the study of oral proteome

scientific article
New Targets for Zika Virus Determined by Human-Viral Interactomic: A Bioinformatics Approach

scientific article published on 12 December 2017
Computational Discovery of Putative Leads for Drug Repositioning through Drug-Target Interaction Prediction

scientific article
Computational methodology for predicting the landscape of the human-microbial interactome region level influence

scientific article published on 11 August 2015
Enchytraeus albidus microarray: enrichment, design, annotation and database (EnchyBASE).

scientific article
The landscape of protein biomarkers proposed for periodontal disease: markers with functional meaning

scientific article published on 26 June 2014
Reconstructing the temporal progression of HIV-1 immune response pathways

scientific article published on June 2016
CanisOme--The protein signatures of Canis lupus familiaris diseases

scientific article
GeneBrowser 2: an application to explore and identify common biological traits in a set of genes

scientific article
From protein-protein interactions to rational drug design: are computational methods up to the challenge?

scientific article published on January 2013
geneCommittee: a web-based tool for extensively testing the discriminatory power of biologically relevant gene sets in microarray data classification

scientific article published on January 30, 2014
Handling Noise in Protein Interaction Networks

scientific article published on 30 October 2019
Improving Literature Searches in Gene Expression Studies

article
Gene-disease prioritization through biomedical networks

article
RecRWR: A Recursive Random Walk Method for Improved Identification of Diseases

scientific article published on March 22, 2015
The Road to Personalized Medicine in Alzheimer’s Disease: The Use of Artificial Intelligence

scientific article published in 2022
Quantitative Characterization of Protein Networks of the Oral Cavity

Challenges Storing and Representing Biomedical Data

Hardware/Software Implementation of FPGA-Targeted Matrix-Oriented SAT Solvers

Metagenomic Analysis of the Saliva Microbiome with Merlin

A Microarray Information Database

Dynamic service integration using web-based workflows

Data Integration Solution for Organ-Specific Studies: An Application for Oral Biology

Ensemble-Based Methodology for the Prediction of Drug-Target Interactions

Mixed-Integer Programming Model for Profiling Disease Biomarkers from Gene Expression Studies

article
Uncovering microbial duality within human microbiomes: A novel algorithm for the analysis of host-pathogen interactions

scientific article published in August 2015
DynamicFlow: A Client-Side Workflow Management System

A Cytoscape-Based Web Tool for Representing Protein Networks

On the exploitation of cloud computing in bioinformatics

scholarly article published November 2010
Weighted Gene Co-expression Network Analysis Applied to Head and Neck Squamous Cell Carcinoma Data

article
SalivaPRINT Toolkit - Protein profile evaluation and phenotype stratification

scientific article published on 23 August 2017

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