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List of works by Eileen E. M. Furlong

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Transcription factors: from enhancer binding to developmental control

scientific article published on 07 August 2012
Gene expression during the life cycle of Drosophila melanogaster

scientific article published in September 2002
Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development

scientific article published on 8 January 2012
Combinatorial binding predicts spatio-temporal cis-regulatory activity

scientific article
Enhancer loops appear stable during development and are associated with paused polymerase

scientific article published on 2 July 2014
Ultrasensitive proteome analysis using paramagnetic bead technology

scientific article
A core transcriptional network for early mesoderm development in Drosophila melanogaster

scientific article published on February 2007
A Temporal Map of Transcription Factor Activity: Mef2 Directly Regulates Target Genes at All Stages of Muscle Development

scientific article (publication date: June 2006)
A transcription factor collective defines cardiac cell fate and reflects lineage history

scientific article
Dynamic regulation by polycomb group protein complexes controls pattern formation and the cell cycle in Drosophila

scientific article published on 6 November 2008
Conservation of transcription factor binding specificities across 600 million years of bilateria evolution

scientific article
The cis-regulatory dynamics of embryonic development at single-cell resolution

scientific article published on 14 March 2018
Shadow Enhancers Are Pervasive Features of Developmental Regulatory Networks

scientific article published on 9 December 2015
A systematic analysis of Tinman function reveals Eya and JAK-STAT signaling as essential regulators of muscle development

scientific article published in February 2009
Analysis of variation at transcription factor binding sites in Drosophila and humans

scientific article published in 2012
easyRNASeq: a bioconductor package for processing RNA-Seq data

scientific article
Developmental enhancers and chromosome topology

scientific article published on 01 September 2018
Temporal ChIP-on-chip reveals Biniou as a universal regulator of the visceral muscle transcriptional network

scientific article published on October 2007
FourCSeq: analysis of 4C sequencing data

scientific article
Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis

scientific article (publication date: 16 January 2007)
Developmental control of nuclear size and shape by Kugelkern and Kurzkern.

scientific article published on 2 February 2006
Cell type-specific chromatin immunoprecipitation from multicellular complex samples using BiTS-ChIP.

scientific article
ChIP-on-chip protocol for genome-wide analysis of transcription factor binding in Drosophila melanogaster embryos

scientific article published in January 2006
Model-based method for transcription factor target identification with limited data

scientific article
The degree of enhancer or promoter activity is reflected by the levels and directionality of eRNA transcription

scientific article
Impact of genomic structural variation in Drosophila melanogaster based on population-scale sequencing

scientific article published on 6 December 2012
Notch and Ras signaling pathway effector genes expressed in fusion competent and founder cells during Drosophila myogenesis

scientific article published on 5 November 2003
Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression

scientific article published on 15 July 2019
A conserved role for Snail as a potentiator of active transcription

scientific article published on 8 January 2014
Automated sorting of live transgenic embryos

scientific article published in February 2001
Predicting spatial and temporal gene expression using an integrative model of transcription factor occupancy and chromatin state

scientific article
Advanced nursing practice: policy, education and role development

scientific article
cis-Regulatory networks during development: a view of Drosophila.

scientific article published on 16 October 2008
Challenges for modeling global gene regulatory networks during development: insights from Drosophila.

scientific article published on 27 October 2009
Promoter shape varies across populations and affects promoter evolution and expression noise

scientific article published on 13 February 2017
Dynamic CRM occupancy reflects a temporal map of developmental progression

scientific article published on June 2010
Integrating transcriptional and signalling networks during muscle development.

scientific article published in August 2004
Myofilin, a protein in the thick filaments of insect muscle

scientific article published on 15 March 2005
Conservation and divergence in developmental networks: a view from Drosophila myogenesis

scientific article
Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers

scientific article
4DXpress: a database for cross-species expression pattern comparisons

scientific article published on 04 October 2007
Dual functionality of cis-regulatory elements as developmental enhancers and Polycomb response elements

scientific article published on 5 April 2017
Subtle changes in motif positioning cause tissue-specific effects on robustness of an enhancer's activity

scientific article
Enhanced function annotations for Drosophila serine proteases: A case study for systematic annotation of multi-member gene families

scientific article (publication date: 2008)
Genetic variants regulating expression levels and isoform diversity during embryogenesis

scientific article published on 26 December 2016
Combinatorial binding leads to diverse regulatory responses: Lmd is a tissue-specific modulator of Mef2 activity

scientific article
Chromosome topology guides the Drosophila Dosage Compensation Complex for target gene activation.

scientific article
The eSMART study protocol: a randomised controlled trial to evaluate electronic symptom management using the advanced symptom management system (ASyMS) remote technology for patients with cancer

scientific article published on 6 June 2017
The role of transcription in shaping the spatial organization of the genome

scientific article published on 01 June 2019
A proteolytic fragment of histone deacetylase 4 protects the heart from failure by regulating the hexosamine biosynthetic pathway.

scientific article published on 11 December 2017

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