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List of works by Zhangjun Fei

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Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening.

scientific article published on 27 January 2013
Genomic analyses provide insights into the history of tomato breeding

scientific article published on 12 October 2014
The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions

scientific article published on 25 November 2012
A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity

scientific article
Systems biology of tomato fruit development: combined transcript, protein, and metabolite analysis of tomato transcription factor (nor, rin) and ethylene receptor (Nr) mutants reveals novel regulatory interactions

scientific article published on 27 July 2011
Draft genome of the kiwifruit Actinidia chinensis

scientific article
The genome of the stress-tolerant wild tomato species Solanum pennellii.

scientific article published on 27 July 2014
Plant MetGenMAP: an integrative analysis system for plant systems biology

scientific article published on 9 October 2009
Combined transcription factor profiling, microarray analysis and metabolite profiling reveals the transcriptional control of metabolic shifts occurring during tomato fruit development.

scientific article
Deep sequencing of small RNAs in tomato for virus and viroid identification and strain differentiation

scientific article
Genome sequence of Brucella abortus vaccine strain S19 compared to virulent strains yields candidate virulence genes

scientific article
Metabolic Coevolution in the Bacterial Symbiosis of Whiteflies and Related Plant Sap-Feeding Insects

scientific article
The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance

scientific article
Comprehensive Tissue-Specific Transcriptome Analysis Reveals Distinct Regulatory Programs during Early Tomato Fruit Development.

scientific article published on 22 June 2015
Genome re-sequencing reveals the history of apple and supports a two-stage model for fruit enlargement

scientific article published on 15 August 2017
High-resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening.

scientific article
Genome-Wide Mapping of Structural Variations Reveals a Copy Number Variant That Determines Reproductive Morphology in Cucumber.

scientific article
A dynamic evolutionary and functional landscape of plant phased small interfering RNAs.

scientific article published on 16 May 2015
Messenger RNA exchange between scions and rootstocks in grafted grapevines

scientific article published on 19 October 2015
TAL effector driven induction of a SWEET gene confers susceptibility to bacterial blight of cotton.

scientific article
The Jujube Genome Provides Insights into Genome Evolution and the Domestication of Sweetness/Acidity Taste in Fruit Trees

scientific article
The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor

scientific article published on 13 May 2019
The PH gene determines fruit acidity and contributes to the evolution of sweet melons

scientific article published on 5 June 2014
Host-secreted antimicrobial peptide enforces symbiotic selectivity in Medicago truncatula.

scientific article published on 12 June 2017
Genome encode analyses reveal the basis of convergent evolution of fleshy fruit ripening

scientific article published on 24 September 2018
Draft genome of spinach and transcriptome diversity of 120 Spinacia accessions

scientific article
Comprehensive Transcriptome Analyses Reveal that Potato Spindle Tuber Viroid Triggers Genome-Wide Changes in Alternative Splicing, Inducible trans-Acting Activity of Phased Secondary Small Interfering RNAs, and Immune Responses

scientific article
De novo and comparative transcriptome analysis of cultivated and wild spinach

scientific article
Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement

scientific article published in Nature Communications
Distinct Mechanisms of the ORANGE Protein in Controlling Carotenoid Flux

scientific article (publication date: 2017)
A Kelch Domain-Containing F-Box Coding Gene Negatively Regulates Flavonoid Accumulation in Muskmelon.

scientific article published on 10 September 2015
Estimation of the Whitefly Bemisia tabaci Genome Size Based on k-mer and Flow Cytometric Analyses

scientific article published on 28 July 2015
Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis.

scientific article published on 7 November 2017
Resequencing of 414 cultivated and wild watermelon accessions identifies selection for fruit quality traits

scientific article published on 01 November 2019
Transcriptome characterization of three wild Chinese Vitis uncovers a large number of distinct disease related genes

scientific article
Diversity, Distribution, and Evolution of Tomato Viruses in China Uncovered by Small RNA Sequencing.

scientific article
Genome of 'Charleston Gray', the principal American watermelon cultivar, and genetic characterization of 1,365 accessions in the U.S. National Plant Germplasm System watermelon collection

scientific article published on 07 May 2019
A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits

scientific article published on 01 November 2019
Elucidation of the Mechanisms of Long-Distance mRNA Movement in a Nicotiana benthamiana/Tomato Heterograft System

scientific article published on 02 May 2018
Comprehensive transcriptome analyses reveal tomato plant responses to tobacco rattle virus-based gene silencing vectors

scientific article published on 29 August 2017
The USDA cucumber ( L.) collection: genetic diversity, population structure, genome-wide association studies, and core collection development

scientific article published on 01 October 2018
Genome and evolution of the arbuscular mycorrhizal fungus Diversispora epigaea (formerly Glomus versiforme) and its bacterial endosymbionts

scientific article published on 13 October 2018
Transcriptome-based identification and validation of reference genes for plant-bacteria interaction studies using Nicotiana benthamiana

scientific article published in Scientific Reports
Genome sequence of the corn leaf aphid (Rhopalosiphum maidis Fitch)

scientific article published on 01 April 2019
Computational identification of condition-specific miRNA targets based on gene expression profiles and sequence information

scientific article
Cellular and molecular characterizations of a slow-growth variant provide insights into the fast growth of bamboo.

scientific article published on 25 October 2017
Differential gene regulatory pathways and co-expression networks associated with fire blight infection in apple ( × )

article
Transcriptome analysis provides insights into the regulation of metabolic processes during postharvest cold storage of loquat (Eriobotrya japonica) fruit

scientific article published on 06 April 2019
Transcriptomic and functional analysis of cucumber (Cucumis sativus L.) fruit phloem during early development

scientific article published on 17 October 2018
Integrated single-base resolution maps of transcriptome, sRNAome and methylome of Tomato yellow leaf curl virus (TYLCV) in tomato

scientific article published on 27 February 2019

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