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List of works by Nicole Stoesser

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Multilocus sequence typing of Clostridium difficile

scientific article
Evolutionary History of the Global Emergence of the Escherichia coli Epidemic Clone ST131

scientific article published on 22 March 2016
Fidaxomicin versus vancomycin for Clostridium difficile infection: meta-analysis of pivotal randomized controlled trials.

scientific article
Clinical Clostridium difficile: clonality and pathogenicity locus diversity

scientific article
Effects of control interventions on Clostridium difficile infection in England: an observational study

scientific article published on 24 January 2017
Identifying lineage effects when controlling for population structure improves power in bacterial association studies

scientific article published on 04 April 2016
Nested Russian Doll-Like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance Gene blaKPC

scientific article published on 11 April 2016
Klebsiella pneumoniae carbapenemase (KPC)-producing K. pneumoniae at a single institution: insights into endemicity from whole-genome sequencing

scientific article
Evolutionary history of the Clostridium difficile pathogenicity locus

scientific article
The Hospital Water Environment as a Reservoir for Carbapenem-Resistant Organisms Causing Hospital-Acquired Infections-A Systematic Review of the Literature

scientific article
Plasmid Classification in an Era of Whole-Genome Sequencing: Application in Studies of Antibiotic Resistance Epidemiology

scientific article published on 09 February 2017
Separate F-Type Plasmids Have Shaped the Evolution of the H30 Subclone of Escherichia coli Sequence Type 131.

scientific article published on 29 June 2016
Identification of Biomarkers for Differentiation of Hypervirulent Klebsiella pneumoniae from Classical K. pneumoniae

scientific article published on 27 August 2018
Mortality risks associated with emergency admissions during weekends and public holidays: an analysis of electronic health records

scientific article
Genomic epidemiology of global Klebsiella pneumoniae carbapenemase (KPC)-producing Escherichia coli.

scientific article
Epidemiology of Clostridium difficile in infants in Oxfordshire, UK: Risk factors for colonization and carriage, and genetic overlap with regional C. difficile infection strains

scientific article published on 16 August 2017
Molecular epidemiology of Clostridium difficile strains in children compared with that of strains circulating in adults with Clostridium difficile-associated infection

scientific article published on 21 September 2011
Chromosomal Integration of the Klebsiella pneumoniae Carbapenemase Gene, blaKPC, in Klebsiella Species Is Elusive but Not Rare

scientific article
Trends over time in Escherichia coli bloodstream infections, urinary tract infections, and antibiotic susceptibilities in Oxfordshire, UK, 1998-2016: a study of electronic health records

scientific article published on 17 August 2018
High rates of human fecal carriage of mcr-1-positive multi-drug resistant Enterobacteriaceae isolates emerge in China in association with successful plasmid families.

scientific article published on 10 October 2017
A curated dataset of complete Enterobacteriaceae plasmids compiled from the NCBI nucleotide database.

scientific article
Increasing incidence of Escherichia coli bacteraemia is driven by an increase in antibiotic-resistant isolates: electronic database study in Oxfordshire 1999-2011.

scientific article published on 21 March 2012
A Large, Refractory Nosocomial Outbreak of Klebsiella pneumoniae Carbapenemase-Producing Escherichia coli Demonstrates Carbapenemase Gene Outbreaks Involving Sink Sites Require Novel Approaches to Infection Control

scientific article published on 26 November 2018
Enhanced Klebsiella pneumoniae Carbapenemase Expression from a Novel Tn4401 Deletion

scientific article
Ordering the mob: Insights into replicon and MOB typing schemes from analysis of a curated dataset of publicly available plasmids

scientific article published on 9 March 2017
Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes

scientific article published on 30 August 2019
Covert dissemination of carbapenemase-producing Klebsiella pneumoniae (KPC) in a successfully controlled outbreak: long- and short-read whole-genome sequencing demonstrate multiple genetic modes of transmission.

scientific article published on 7 August 2017
Characteristics of CTX-M ESBL-producing Escherichia coli isolates from the Lao People's Democratic Republic, 2004-09

scientific article published on October 10, 2011
Bayesian reconstruction of transmission within outbreaks using genomic variants

scientific article published on 18 April 2018
Changing Patterns of Gastrointestinal Parasite Infections in Cambodian Children: 2006-2011

scientific article published on June 21, 2012
The value of intermittent point-prevalence surveys of healthcare-associated infections for evaluating infection control interventions at Angkor Hospital for Children, Siem Reap, Cambodia

scientific article published on February 14, 2013
A Role for Tetracycline Selection in Recent Evolution of Agriculture-Associated PCR Ribotype 078

scientific article published on 12 March 2019
Complete Genome Sequence of KPC-Producing Klebsiella pneumoniae Strain CAV1193.

scientific article
First Report of blaIMP-14 on a Plasmid Harboring Multiple Drug Resistance Genes in Escherichia coli Sequence Type 131.

scientific article published on 31 May 2016
IncX2 and IncX1-X2 Hybrid Plasmids Coexisting in a FosA6-Producing Escherichia coli Strain.

scientific article published on 24 April 2017
Complete Sequencing of Plasmids Containing blaOXA-163 and blaOXA-48 in Escherichia coli Sequence Type 131.

scientific article published on 06 September 2016
Risk Factors for Clostridium difficile Acquisition in Infants: Importance of Study Design

scientific article published on 26 February 2013
Characterization of a Novel IncHI2 Plasmid Carrying Tandem Copies of blaCTX-M-2 in a fosA6-Harboring Escherichia coli Sequence Type 410 Strain

scientific article published on 29 August 2016
TETyper: a bioinformatic pipeline for classifying variation and genetic contexts of transposable elements from short-read whole-genome sequencing data

article
Paediatric Chromobacterium violaceum in Cambodia: the first documented case

scientific article published on 01 July 2012
Klebsiella quasipneumoniae Provides a Window into Carbapenemase Gene Transfer, Plasmid Rearrangements, and Patient Interactions with the Hospital Environment.

scientific article published on 24 May 2019
Antibody Status and Incidence of SARS-CoV-2 Infection in Health Care Workers

scientific article published on 23 December 2020
A role for tetracycline selection in the evolution ofClostridium difficilePCR-ribotype 078

The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples

scientific article published on 24 October 2019
Epidemiology of paediatric gastrointestinal colonisation by extended spectrum cephalosporin-resistant Escherichia coli and Klebsiella pneumoniae isolates in north-west Cambodia

scientific article published on 16 August 2017
Genomic epidemiology of global Klebsiella pneumoniae carbapenemase (KPC)-producing E. coli

Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism-calling pipelines

scientific article published on 01 February 2020
A haemagglutination test for rapid detection of antibodies to SARS-CoV-2

Differential occupational risks to healthcare workers from SARS-CoV-2 observed during a prospective observational study

scientific article published on 21 August 2020
TETyper: a bioinformatic pipeline for classifying variation and genetic contexts of transposable elements from short-read whole-genome sequencing data

scientific article published on 23 March 2018

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