List of works - Lukasz Kurgan

D²P²: database of disordered protein predictions

scientific article

MoRFpred, a computational tool for sequence-based prediction and characterization of short disorder-to-order transitioning binding regions in proteins

scientific article

SPINE X: improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles

scientific article published on 2 November 2011

Comprehensive comparative assessment of in-silico predictors of disordered regions

scientific article published in February 2012

Exceptionally abundant exceptions: comprehensive characterization of intrinsic disorder in all domains of life

scientific article published on 18 June 2014

Improved sequence-based prediction of disordered regions with multilayer fusion of multiple information sources

scientific article

Accurate prediction of disorder in protein chains with a comprehensive and empirically designed consensus

article published in 2013

Structural disorder in viral proteins

scientific article published on 13 May 2014

A creature with a hundred waggly tails: intrinsically disordered proteins in the ribosome

scientific article published on 13 August 2013

PFRES: protein fold classification by using evolutionary information and predicted secondary structure

scientific article

Prediction of protein structural class using novel evolutionary collocation-based sequence representation

scientific article published in July 2008

More than just tails: intrinsic disorder in histone proteins

scientific article published on 27 April 2012

Protein intrinsic disorder as a flexible armor and a weapon of HIV-1.

scientific article published on 28 October 2011

Disordered proteinaceous machines

scientific article

Prediction and analysis of nucleotide-binding residues using sequence and sequence-derived structural descriptors

scientific article published on 29 November 2011

High-throughput prediction of RNA, DNA and protein binding regions mediated by intrinsic disorder

scientific article

SCPRED: accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences

scientific article published on May 2008

Prediction of flexible/rigid regions from protein sequences using k-spaced amino acid pairs

scientific article published on 16 April 2007

On the relation between residue flexibility and local solvent accessibility in proteins

scientific article published in August 2009

Accurate sequence-based prediction of catalytic residues

scientific article published on 18 August 2008

Prediction of protein crystallization using collocation of amino acid pairs

scientific article published on 15 February 2007

Sequence-based prediction of protein crystallization, purification and production propensity

scientific article

Comprehensive review of methods for prediction of intrinsic disorder and its molecular functions

scientific article published on 6 June 2017

Molecular recognition features (MoRFs) in three domains of life

scientific article published on 09 December 2015

Interplay between the oxidoreductase PDIA6 and microRNA-322 controls the response to disrupted endoplasmic reticulum calcium homeostasis.

scientific article published on 10 June 2014

Classifier ensembles for protein structural class prediction with varying homology

scientific article published on 31 July 2006

A comprehensive comparative review of sequence-based predictors of DNA- and RNA-binding residues.

scientific article published on May 2015

The intrinsic disorder status of the human hepatitis C virus proteome

scientific article published on 22 April 2014

Resilience of death: intrinsic disorder in proteins involved in the programmed cell death

scientific article

Modular prediction of protein structural classes from sequences of twilight-zone identity with predicting sequences

scientific article

Prediction of protein structural class for the twilight zone sequences

scientific article published on 5 April 2007

Compartmentalization and Functionality of Nuclear Disorder: Intrinsic Disorder and Protein-Protein Interactions in Intra-Nuclear Compartments

scientific article

Prediction of integral membrane protein type by collocated hydrophobic amino acid pairs

scientific article

Genome-scale prediction of proteins with long intrinsically disordered regions

scientific article

CRYSTALP2: sequence-based protein crystallization propensity prediction

scientific article

Comprehensive overview and assessment of computational prediction of microRNA targets in animals

scientific article

A critical comparative assessment of predictions of protein-binding sites for biologically relevant organic compounds

scientific article

BEST: improved prediction of B-cell epitopes from antigen sequences

scientific article (publication date: 2012)

Prediction of beta-turns at over 80% accuracy based on an ensemble of predicted secondary structures and multiple alignments

scientific article

Analysis and prediction of RNA-binding residues using sequence, evolutionary conservation, and predicted secondary structure and solvent accessibility

scientific article published in November 2010

ATPsite: sequence-based prediction of ATP-binding residues

scientific article published on 14 October 2011

Critical assessment of high-throughput standalone methods for secondary structure prediction

scientific article published on 20 January 2011

Sequence based residue depth prediction using evolutionary information and predicted secondary structure

scientific article

MFDp2: Accurate predictor of disorder in proteins by fusion of disorder probabilities, content and profiles

scientific article published on January 2013

In-silico prediction of disorder content using hybrid sequence representation

scientific article

Secondary structure-based assignment of the protein structural classes

scientific article

Monocytes from patients with osteoarthritis display increased osteoclastogenesis and bone resorption: the In Vitro Osteoclast Differentiation in Arthritis study.

scientific article

Stochastic machines as a colocalization mechanism for scaffold protein function

scientific article

Unstructural biology of the Dengue virus proteins

scientific article

Structural protein descriptors in 1-dimension and their sequence-based predictions

scientific article

List of works by Lukasz Kurgan

D²P²: database of disordered protein predictions

MoRFpred, a computational tool for sequence-based prediction and characterization of short disorder-to-order transitioning binding regions in proteins

SPINE X: improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles

Comprehensive comparative assessment of in-silico predictors of disordered regions

Exceptionally abundant exceptions: comprehensive characterization of intrinsic disorder in all domains of life

Improved sequence-based prediction of disordered regions with multilayer fusion of multiple information sources

Accurate prediction of disorder in protein chains with a comprehensive and empirically designed consensus

Structural disorder in viral proteins

A creature with a hundred waggly tails: intrinsically disordered proteins in the ribosome

PFRES: protein fold classification by using evolutionary information and predicted secondary structure

Prediction of protein structural class using novel evolutionary collocation-based sequence representation

More than just tails: intrinsic disorder in histone proteins

Protein intrinsic disorder as a flexible armor and a weapon of HIV-1.

Disordered proteinaceous machines

Prediction and analysis of nucleotide-binding residues using sequence and sequence-derived structural descriptors

High-throughput prediction of RNA, DNA and protein binding regions mediated by intrinsic disorder

SCPRED: accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences

Prediction of flexible/rigid regions from protein sequences using k-spaced amino acid pairs

On the relation between residue flexibility and local solvent accessibility in proteins

Accurate sequence-based prediction of catalytic residues

Prediction of protein crystallization using collocation of amino acid pairs

Sequence-based prediction of protein crystallization, purification and production propensity

Comprehensive review of methods for prediction of intrinsic disorder and its molecular functions

Molecular recognition features (MoRFs) in three domains of life

Interplay between the oxidoreductase PDIA6 and microRNA-322 controls the response to disrupted endoplasmic reticulum calcium homeostasis.

Classifier ensembles for protein structural class prediction with varying homology

A comprehensive comparative review of sequence-based predictors of DNA- and RNA-binding residues.

The intrinsic disorder status of the human hepatitis C virus proteome

Resilience of death: intrinsic disorder in proteins involved in the programmed cell death

Modular prediction of protein structural classes from sequences of twilight-zone identity with predicting sequences

Prediction of protein structural class for the twilight zone sequences

Compartmentalization and Functionality of Nuclear Disorder: Intrinsic Disorder and Protein-Protein Interactions in Intra-Nuclear Compartments

Prediction of integral membrane protein type by collocated hydrophobic amino acid pairs

Genome-scale prediction of proteins with long intrinsically disordered regions

CRYSTALP2: sequence-based protein crystallization propensity prediction

Comprehensive overview and assessment of computational prediction of microRNA targets in animals

A critical comparative assessment of predictions of protein-binding sites for biologically relevant organic compounds

BEST: improved prediction of B-cell epitopes from antigen sequences

Prediction of beta-turns at over 80% accuracy based on an ensemble of predicted secondary structures and multiple alignments

Analysis and prediction of RNA-binding residues using sequence, evolutionary conservation, and predicted secondary structure and solvent accessibility

ATPsite: sequence-based prediction of ATP-binding residues

Critical assessment of high-throughput standalone methods for secondary structure prediction

Sequence based residue depth prediction using evolutionary information and predicted secondary structure

MFDp2: Accurate predictor of disorder in proteins by fusion of disorder probabilities, content and profiles

In-silico prediction of disorder content using hybrid sequence representation

Secondary structure-based assignment of the protein structural classes

Monocytes from patients with osteoarthritis display increased osteoclastogenesis and bone resorption: the In Vitro Osteoclast Differentiation in Arthritis study.

Stochastic machines as a colocalization mechanism for scaffold protein function

Unstructural biology of the Dengue virus proteins

Structural protein descriptors in 1-dimension and their sequence-based predictions