Advanced search

Authors whose works are in public domain in at least one jurisdiction

List of works by Jonathan R. Karr

1-17 of 17 results

View this query on the Wikidata Query Service
Integrating metabolic, transcriptional regulatory and signal transduction models in Escherichia coli.

scientific article published on 10 July 2008
Toward Community Standards and Software for Whole-Cell Modeling

scientific article
Accelerated discovery via a whole-cell model

scientific article
WholeCellKB: model organism databases for comprehensive whole-cell models

scientific article published on November 21, 2012
Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models

scientific article published on 28 May 2015
The principles of whole-cell modeling

scientific article published on 23 June 2015
WholeCellSimDB: a hybrid relational/HDF database for whole-cell model predictions

scientific article
WholeCellViz: data visualization for whole-cell models

scientific article
Guidelines for Reproducibly Building and Simulating Systems Biology Models

scientific article published on 18 July 2016
A combined systems and structural modeling approach repositions antibiotics for Mycoplasma genitalium

scientific article
NetworkPainter: dynamic intracellular pathway animation in Cytobank

scientific article
Organizing genome engineering for the gigabase scale

scientific article published on 04 February 2020
DE-Sim: an object-oriented, discrete-event simulation tool for data-intensive modeling of complex systems in Python

scientific article published on 16 November 2020
The simulation experiment description markup language (SED-ML): language specification for level 1 version 5

scientific article published in March 2024
Reusability and composability in process description maps: RAS-RAF-MEK-ERK signalling

scientific article published on 8 December 2020
Practical resources for enhancing the reproducibility of mechanistic modeling in systems biology

scientific article published in September 2021
BioSimulators: a central registry of simulation engines and services for recommending specific tools

Paulina is supported by:

About Paulina

Help