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List of works by Ryan Lister

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Human DNA methylomes at base resolution show widespread epigenomic differences

scientific article
Highly integrated single-base resolution maps of the epigenome in Arabidopsis

scientific article (publication date: 2 May 2008)
Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells

scientific article
Global epigenomic reconfiguration during mammalian brain development

scientific article (publication date: 9 August 2013)
Distinct epigenomic landscapes of pluripotent and lineage-committed human cells.

scientific article
Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells

scientific article
Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications

scientific article
Epigenomic analysis of multilineage differentiation of human embryonic stem cells

scientific article published on 09 May 2013
Widespread dynamic DNA methylation in response to biotic stress

scientific article published on June 25, 2012
Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer

scientific article published on 7 December 2011
Genome evolution in the allotetraploid frog Xenopus laevis

scientific article
A link between RNA metabolism and silencing affecting Arabidopsis development

scientific article published on 22 May 2008
Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain

scientific article published on June 2015
Finding the fifth base: genome-wide sequencing of cytosine methylation.

scientific article published on 09 March 2009
Stress-induced co-expression of alternative respiratory chain components in Arabidopsis thaliana.

scientific article published in May 2005
Next is now: new technologies for sequencing of genomes, transcriptomes, and beyond

scientific article published on 20 January 2009
MethylC-seq library preparation for base-resolution whole-genome bisulfite sequencing

scientific article published on 18 February 2015
The Arabidopsis glutathione transferase gene family displays complex stress regulation and co-silencing multiple genes results in altered metabolic sensitivity to oxidative stress

scientific article
Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements

scientific article
Active DNA demethylation at enhancers during the vertebrate phylotypic period

scientific article published on 29 February 2016
Functional definition of outer membrane proteins involved in preprotein import into mitochondria

scientific article published in 2007
A transcriptomic and proteomic characterization of the Arabidopsis mitochondrial protein import apparatus and its response to mitochondrial dysfunction

scientific article published on 15 January 2004
Identification of regulatory pathways controlling gene expression of stress-responsive mitochondrial proteins in Arabidopsis

scientific article published on 20 June 2008
Unique cell-type-specific patterns of DNA methylation in the root meristem.

scientific article
Epigenomic landscapes of retinal rods and cones

scientific article
Population scale mapping of transposable element diversity reveals links to gene regulation and epigenomic variation

scientific article published on 02 December 2016
Characterization of the preprotein and amino acid transporter gene family in Arabidopsis

scientific article published on 10 November 2006
A plant outer mitochondrial membrane protein with high amino acid sequence identity to a chloroplast protein import receptor

scientific article published on 16 December 2003
Genome-wide DNA methylation patterns in LSH mutant reveals de-repression of repeat elements and redundant epigenetic silencing pathways

scientific article
Embryonic transcription is controlled by maternally defined chromatin state.

scientific article
Protein import into mitochondria: origins and functions today (review).

scientific article
Analysis of an artificial zinc finger epigenetic modulator: widespread binding but limited regulation

scientific article
Identification, expression, and import of components 17 and 23 of the inner mitochondrial membrane translocase from Arabidopsis

scientific article published in April 2003
Amphioxus functional genomics and the origins of vertebrate gene regulation

scientific article published in Nature
methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data

scientific article
Comprehensive characterization of distinct states of human naive pluripotency generated by reprogramming

scientific article published on 25 September 2017
Arabidopsis thaliana ferrochelatase-I and -II are not imported into Arabidopsis mitochondria

scientific article published on 01 October 2001
Transient and Permanent Reconfiguration of Chromatin and Transcription Factor Occupancy Drive Reprogramming

scientific article published in December 2017
Turning over DNA methylation in the mind

scientific article (publication date: 2015)
CG hypomethylation in Lsh-/- mouse embryonic fibroblasts is associated with de novo H3K4me1 formation and altered cellular plasticity

scientific article published on 07 April 2014
Characterization of the regulatory and expression context of an alternative oxidase gene provides insights into cyanide-insensitive respiration during growth and development

scientific article published on 23 February 2007
Extensive transcriptomic and epigenomic remodelling occurs during Arabidopsis thaliana germination.

scientific article published on 15 September 2017
A modular dCas9-SunTag DNMT3A epigenome editing system overcomes pervasive off-target activity of direct fusion dCas9-DNMT3A constructs

scientific article published on 15 June 2018
Zinc-dependent intermembrane space proteins stimulate import of carrier proteins into plant mitochondria.

scientific article published in June 2002
DNA methylation and the preservation of cell identity

scientific article published on 23 June 2017
Rapid recovery gene downregulation during excess-light stress and recovery in Arabidopsis.

scientific article published on 13 July 2017
LINE-1 Evasion of Epigenetic Repression in Humans

scientific article published on 20 June 2019
The Mitochondrial Protein Import Machinery of Plants (MPIMP) database

scientific article published on January 2003
Mitochondrial Protein Import: Convergent Solutions for Receptor Structure

scientific article published on 01 March 2006
DNA methylation profiles of diverse Brachypodium distachyon align with underlying genetic diversity

scientific article published on 09 September 2016

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