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List of works by Blake Alexander Simmons

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The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)

scientific article
A single-base resolution map of an archaeal transcriptome

scientific article
The challenge of enzyme cost in the production of lignocellulosic biofuels

scientific article published on 21 November 2011
MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets

scientific article published on 29 October 2015
Comparison of dilute acid and ionic liquid pretreatment of switchgrass: Biomass recalcitrance, delignification and enzymatic saccharification

scientific article published on 30 November 2009
Dielectrophoretic concentration and separation of live and dead bacteria in an array of insulators

scientific article
MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm

scientific article
Human ORFeome version 1.1: a platform for reverse proteomics

scientific article
Synthesis of three advanced biofuels from ionic liquid-pretreated switchgrass using engineered Escherichia coli

scientific article
Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community

scientific article (publication date: 21 January 2010)
Visualization of biomass solubilization and cellulose regeneration during ionic liquid pretreatment of switchgrass

scientific article published in September 2009
In vivo lipidomics using single-cell Raman spectroscopy

scientific article
Influence of connectivity and porosity on ligand-based luminescence in zinc metal-organic frameworks

scientific article
Overexpression of the maize Corngrass1 microRNA prevents flowering, improves digestibility, and increases starch content of switchgrass

scientific article (publication date: 18 October 2011)
An insulator-based (electrodeless) dielectrophoretic concentrator for microbes in water

scientific article published in September 2005
The completion of the Mammalian Gene Collection (MGC).

scientific article published on 18 September 2009
Advances in modifying lignin for enhanced biofuel production

scientific article published on 30 March 2010
Transition of cellulose crystalline structure and surface morphology of biomass as a function of ionic liquid pretreatment and its relation to enzymatic hydrolysis

scientific article published on 25 February 2011
Influence of physico-chemical changes on enzymatic digestibility of ionic liquid and AFEX pretreated corn stover.

scientific article published on 8 April 2011
Understanding the interactions of cellulose with ionic liquids: a molecular dynamics study

scientific article published in April 2010
Glycoside hydrolase activities of thermophilic bacterial consortia adapted to switchgrass

scientific article
Efficient biomass pretreatment using ionic liquids derived from lignin and hemicellulose

scientific article
Biomass deconstruction to sugars

scientific article published on 10 August 2011
Techno-economic analysis of a lignocellulosic ethanol biorefinery with ionic liquid pre-treatment

article
Characterization of trapped lignin-degrading microbes in tropical forest soil

scientific article (publication date: 29 April 2011)
Biosynthesis and incorporation of side-chain-truncated lignin monomers to reduce lignin polymerization and enhance saccharification

article
A thermophilic ionic liquid-tolerant cellulase cocktail for the production of cellulosic biofuels

scientific article (publication date: 2012)
A comparative study of ethanol production using dilute acid, ionic liquid and AFEX™ pretreated corn stover

scientific article (publication date: 2014)
Engineering and two-stage evolution of a lignocellulosic hydrolysate-tolerant Saccharomyces cerevisiae strain for anaerobic fermentation of xylose from AFEX pretreated corn stover

scientific article
A mosaic monoploid reference sequence for the highly complex genome of sugarcane.

scientific article published on 6 July 2018
Strategies for Enhancing the Effectiveness of Metagenomic-based Enzyme Discovery in Lignocellulolytic Microbial Communities

article
Ionic liquid tolerant hyperthermophilic cellulases for biomass pretreatment and hydrolysis

Triacylglycerol accumulation and profiling in the model diatoms Thalassiosira pseudonana and Phaeodactylum tricornutum (Baccilariophyceae) during starvation

article
Impact of ionic liquid pretreated plant biomass on Saccharomyces cerevisiae growth and biofuel production

article
Design of low-cost ionic liquids for lignocellulosic biomass pretreatment

article by Anthe George et al published 2015 in Green Chemistry
Proteogenomic analysis of a thermophilic bacterial consortium adapted to deconstruct switchgrass

scientific article (publication date: 2013)
Three Novel Rice Genes Closely Related to the Arabidopsis IRX9, IRX9L, and IRX14 Genes and Their Roles in Xylan Biosynthesis

scientific article published on 10 April 2013
Global transcriptome response to ionic liquid by a tropical rain forest soil bacterium, Enterobacter lignolyticus

scientific article (publication date: 7 August 2012)
Supramolecular self-assembled chaos: polyphenolic lignin's barrier to cost-effective lignocellulosic biofuels

scientific article
Complete genome sequence of "Enterobacter lignolyticus" SCF1

scientific article (publication date: 15 October 2011)
An auto-inducible mechanism for ionic liquid resistance in microbial biofuel production.

scientific article published on 26 March 2014
Survey of renewable chemicals produced from lignocellulosic biomass during ionic liquid pretreatment

scientific article published on 28 January 2013
One-pot ionic liquid pretreatment and saccharification of switchgrass

article
Expression of a bacterial 3-dehydroshikimate dehydratase reduces lignin content and improves biomass saccharification efficiency.

scientific article published on 13 January 2015
Addressing the need for alternative transportation fuels: the Joint BioEnergy Institute

scientific article published in January 2008
Sample concentration and impedance detection on a microfluidic polymer chip

scientific article published in October 2008
Impact of ionic liquid pretreatment conditions on cellulose crystalline structure using 1-ethyl-3-methylimidazolium acetate

scientific article published on 10 August 2012
Glycoside hydrolases from a targeted compost metagenome, activity-screening and functional characterization

scientific article
Enzyme activities of aerobic lignocellulolytic bacteria isolated from wet tropical forest soils

scientific article
Exploring the effect of different plant lignin content and composition on ionic liquid pretreatment efficiency and enzymatic saccharification of Eucalyptus globulus L. mutants.

scientific article published on 25 April 2012

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