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List of works by Kazutaka Katoh

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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

scientific article (publication date: April 2013)
MAFFT version 5: improvement in accuracy of multiple sequence alignment

scientific article
Recent developments in the MAFFT multiple sequence alignment program

scientific article (publication date: July 2008)
Multiple alignment of DNA sequences with MAFFT

scientific article (publication date: 2009)
MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization.

scientific article
Parallelization of the MAFFT multiple sequence alignment program

scientific article
Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework

scientific article
GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters

scientific article published on 16 April 2015
aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity.

scientific article published on 15 May 2013
A simple method to control over-alignment in the MAFFT multiple sequence alignment program

scientific article published on 26 February 2016
Adding unaligned sequences into an existing alignment using MAFFT and LAST.

scientific article
Application of the MAFFT sequence alignment program to large data-reexamination of the usefulness of chained guide trees

scientific article
Parallelization of MAFFT for large-scale multiple sequence alignments

scientific article
Basal jawed vertebrate phylogeny inferred from multiple nuclear DNA-coded genes

scientific article
PartTree: an algorithm to build an approximate tree from a large number of unaligned sequences

scientific article
Genetic algorithm-based maximum-likelihood analysis for molecular phylogeny

scientific article published on October 2001
Molecular evolution of arthropod color vision deduced from multiple opsin genes of jumping spiders

scientific article
Sponge homologs of vertebrate protein tyrosine kinases and frequent domain shufflings in the early evolution of animals before the parazoan-eumetazoan split

scientific article published on December 2001
Multiple receptor-like kinase cDNAs from liverwort Marchantia polymorpha and two charophycean green algae, Closterium ehrenbergii and Nitella axillaris: Extensive gene duplications and gene shufflings in the early evolution of streptophytes

scientific article
MAFFT-DASH: integrated protein sequence and structural alignment

scientific article published on 01 July 2019
Protein multiple sequence alignment

scientific article published on January 2008
A heuristic approach of maximum likelihood method for inferring phylogenetic tree and an application to the mammalian SOX-3 origin of the testis-determining gene SRY.

scientific article
MAO: a Multiple Alignment Ontology for nucleic acid and protein sequences

scientific article
Comparative analyses of lysophosphatidic acid receptor-mediated signaling

scientific article
Long-read sequencing identifies GGC repeat expansions in NOTCH2NLC associated with neuronal intranuclear inclusion disease

scientific article published on 22 July 2019
Cyclostome hemoglobins are possibly paralogous to gnathostome hemoglobins

scientific article published in August 2002
Functional lysophosphatidic acid receptors expressed in Oryzias latipes

scientific article published on 28 August 2014
Benchmarking the discrimination power of commonly used markers and amplicons in marine fish (e)DNA (meta)barcoding

scientific article published in 2024
An engineered ACE2 decoy neutralizes the SARS-CoV-2 Omicron variant and confers protection against infection in vivo

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