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List of works by Paul J. Kersey

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Gene Ontology Consortium: going forward

scientific article (publication date: 2015)
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species

scientific article (publication date: 16 May 2012)
Analysis of the bread wheat genome using whole-genome shotgun sequencing

scientific article
Ensembl BioMarts: a hub for data retrieval across taxonomic space

scientific article
The International Protein Index: an integrated database for proteomics experiments

scientific article (publication date: July 2004)
Multiple reference genomes and transcriptomes for Arabidopsis thaliana

scientific article published on 28 August 2011
The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data

scientific article (publication date: February 2004)
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

scientific article
Gene Ontology annotations and resources

scientific article
A chromosome conformation capture ordered sequence of the barley genome

scientific article
Assemblathon 1: a competitive assessment of de novo short read assembly methods

scientific article
Ensembl Genomes 2016: more genomes, more complexity

scientific article
PomBase: a comprehensive online resource for fission yeast

scientific article
Integrative annotation of 21,037 human genes validated by full-length cDNA clones

scientific article
The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro

scientific article published on 12 March 2003
WormBase 2012: more genomes, more data, new website

scientific article
Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species.

scientific article published on 30 October 2017
WormBase 2016: expanding to enable helminth genomic research

scientific article
Ensembl Genomes 2013: scaling up access to genome-wide data

scientific article
WormBase 2014: new views of curated biology

scientific article
An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations

scientific article
Gramene database in 2010: updates and extensions

scientific article (publication date: 2011)
UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs

scientific article
Ensembl Genomes: extending Ensembl across the taxonomic space

scientific article
WormBase ParaSite - a comprehensive resource for helminth genomics

scientific article
Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species.

scientific article
Gramene 2013: comparative plant genomics resources.

scientific article
Integr8 and Genome Reviews: integrated views of complete genomes and proteomes

scientific article
Automated annotation of microbial proteomes in SWISS-PROT.

scientific article published in February 2003
Gramene 2016: comparative plant genomics and pathway resources

scientific article
WormBase 2017: molting into a new stage.

scientific article published on 24 October 2017
RNAcentral: an international database of ncRNA sequences

scientific article
PomBase 2015: updates to the fission yeast database

scientific article
Towards recommendations for metadata and data handling in plant phenotyping.

scientific article published on 4 June 2015
Construction of a map-based reference genome sequence for barley, Hordeum vulgare L

scientific article
RNAcentral: A vision for an international database of RNA sequences

scientific article (publication date: November 2011)
Ensembl Plants: Integrating Tools for Visualizing, Mining, and Analyzing Plant Genomics Data

scientific article
Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes

scientific article
Measures for interoperability of phenotypic data: minimum information requirements and formatting

scientific article
Gramene 2018: unifying comparative genomics and pathway resources for plant research

scientific article
The Proteome Analysis database: a tool for the in silico analysis of whole proteomes

scientific article published on January 2003
Positive and negative roles for cdc10 in cell cycle gene expression

scientific article published on December 1995
In silico characterization of proteins: UniProt, InterPro and Integr8.

scientific article published on 04 October 2007
Triticeae resources in Ensembl Plants

scientific article
VARSPLIC: alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL

article
Studying Culicoides vectors of BTV in the post-genomic era: resources, bottlenecks to progress and future directions

scientific article published on 17 December 2013
De novo transcriptome assembly and analyses of gene expression during photomorphogenesis in diploid wheat Triticum monococcum

scientific article
Applications of InterPro in protein annotation and genome analysis

scientific article published on September 2002
Ensembl Genomes 2020-enabling non-vertebrate genomic research

scientific article published on 01 January 2020
Ensembl Plants: Integrating Tools for Visualizing, Mining, and Analyzing Plant Genomic Data.

scientific article

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