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List of works by Can Alkan

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A Draft Sequence of the Neandertal Genome

scientific article
A hexanucleotide repeat expansion in C9ORF72 is the cause of chromosome 9p21-linked ALS-FTD

scientific article
Mapping and sequencing of structural variation from eight human genomes

scientific article
Mapping copy number variation by population-scale genome sequencing

scientific article
A high-coverage genome sequence from an archaic Denisovan individual

scientific article
An integrated map of structural variation in 2,504 human genomes

scientific article
Genetic history of an archaic hominin group from Denisova Cave in Siberia

scientific article
Genome structural variation discovery and genotyping

scientific article published on March 2011
Personalized copy number and segmental duplication maps using next-generation sequencing.

scientific article
Diversity of human copy number variation and multicopy genes

scientific article
Limitations of next-generation genome sequence assembly

scientific article
Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding

scientific article
Insights into hominid evolution from the gorilla genome sequence

scientific article
Great ape genetic diversity and population history

scientific article published on 03 July 2013
Comparative and demographic analysis of orang-utan genomes

scientific article
Complete Khoisan and Bantu genomes from southern Africa

scientific article
Genome sequencing highlights the dynamic early history of dogs

scientific article published in January 2014
Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes

scientific article published on 15 May 2009
The bonobo genome compared with the chimpanzee and human genomes

scientific article
mrsFAST: a cache-oblivious algorithm for short-read mapping.

scientific article
Refinement and discovery of new hotspots of copy-number variation associated with autism spectrum disorder

scientific article
Activating mutations of STAT5B and STAT3 in lymphomas derived from γδ-T or NK cells

scientific article published on 14 January 2015
Copy number variation of individual cattle genomes using next-generation sequencing

scientific article published on 2 February 2012
Haplotype-resolved genome sequencing of a Gujarati Indian individual.

scientific article
A burst of segmental duplications in the genome of the African great ape ancestor

scientific article published on February 2009
Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery

scientific article
The structure and evolution of centromeric transition regions within the human genome

scientific article published on 01 August 2004
Reconstructing complex regions of genomes using long-read sequencing technology

scientific article published on 13 January 2014
Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication

scientific article
Characterization of missing human genome sequences and copy-number polymorphic insertions

scientific article
Analysis of primate genomic variation reveals a repeat-driven expansion of the human genome

scientific article
Detection of structural variants and indels within exome data

scientific article
Death and resurrection of the human IRGM gene

scientific article published in March 2009
Alu repeat discovery and characterization within human genomes

scientific article
Detection and characterization of novel sequence insertions using paired-end next-generation sequencing

scientific article
A large and complex structural polymorphism at 16p12.1 underlies microdeletion disease risk

scientific article
Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee

scientific article
SCALCE: boosting sequence compression algorithms using locally consistent encoding

scientific article
Identification and validation of a novel mature microRNA encoded by the Merkel cell polyomavirus in human Merkel cell carcinomas

scientific article published on 9 September 2011
Organization and evolution of primate centromeric DNA from whole-genome shotgun sequence data

scientific article
Genome-wide characterization of centromeric satellites from multiple mammalian genomes

scientific article (publication date: 2011)
New insights into centromere organization and evolution from the white-cheeked gibbon and marmoset

scientific article
mrsFAST-Ultra: a compact, SNP-aware mapper for high performance sequencing applications

scientific article
Rates and patterns of great ape retrotransposition

scientific article published on 24 July 2013
Demographically-Based Evaluation of Genomic Regions under Selection in Domestic Dogs

scientific article
Early postzygotic mutations contribute to de novo variation in a healthy monozygotic twin pair

scientific article published on 24 April 2014
Accelerating read mapping with FastHASH.

scientific article
Optimal design of oligonucleotide microarrays for measurement of DNA copy-number

article by Andrew J. Sharp et al published 28 August 2007 in Human Molecular Genetics
Annotated features of domestic cat - Felis catus genome

scientific article
The genome sequencing of an albino Western lowland gorilla reveals inbreeding in the wild

scientific article

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