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List of works by James Galagan

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Initial sequencing and analysis of the human genome

scientific article published on 15 February 2001
Genome sequence of Aedes aegypti, a major arbovirus vector

scientific article
The genome sequence of the rice blast fungus Magnaporthe grisea

scientific article
Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus

scientific article
Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae

scientific article
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

scientific article
Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis

scientific article
Genome sequencing and analysis of Aspergillus oryzae

scientific article
Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved

scientific article
The genome of M. acetivorans reveals extensive metabolic and physiological diversity

scientific article
Lessons from the genome sequence of Neurospora crassa: tracing the path from genomic blueprint to multicellular organism

scientific article published on March 2004
A genome-wide map of diversity in Plasmodium falciparum

scientific article published on 10 December 2006
Whole-genome sequencing of rifampicin-resistant Mycobacterium tuberculosis strains identifies compensatory mutations in RNA polymerase genes.

scientific article published on 18 December 2011
Dynamics of Pseudomonas aeruginosa genome evolution

scientific article
Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection

scientific article
RIP: the evolutionary cost of genome defense

scientific article published in September 2004
The Mycobacterium tuberculosis regulatory network and hypoxia

scientific article
Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production

scientific article
Naturally occurring dominant resistance mutations to hepatitis C virus protease and polymerase inhibitors in treatment-naïve patients

scientific article (publication date: December 2008)
Pneumococcal capsular polysaccharide structure predicts serotype prevalence

scientific article
Comparative genomics yields insights into niche adaptation of plant vascular wilt pathogens

scientific article
Genomic analysis of the basal lineage fungus Rhizopus oryzae reveals a whole-genome duplication

scientific article
TB database: an integrated platform for tuberculosis research

scientific article published on 03 October 2008
Genomics of the fungal kingdom: insights into eukaryotic biology

scientific article
Dothideomycete plant interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorum

scientific article
Enabling a community to dissect an organism: overview of the Neurospora functional genomics project

scientific article published in January 2007
Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts.

scientific article
Assembly of polymorphic genomes: algorithms and application to Ciona savignyi

scientific article published on August 2005
Comparative genomic characterization of Francisella tularensis strains belonging to low and high virulence subspecies

scientific article
Short-term genome evolution of Listeria monocytogenes in a non-controlled environment

scientific article
TB database 2010: overview and update

scientific article
Genomic insights into tuberculosis

scientific article published on March 25, 2014
A systems biology approach to infectious disease research: innovating the pathogen-host research paradigm

scientific article
Evolutionary roles of upstream open reading frames in mediating gene regulation in fungi

scientific article published on January 2009
The DNA-binding network of Mycobacterium tuberculosis

scientific article
Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into the emergence and spread of multidrug resistance

scientific article
GenomeView: a next-generation genome browser

scientific article
Patterns of intron gain and loss in fungi

scientific article
Cross-kingdom patterns of alternative splicing and splice recognition

scientific article (publication date: 2008)
Large-scale identification of genetic design strategies using local search

scientific article published on 18 August 2009
The role of selection in shaping diversity of natural M. tuberculosis populations

scientific article (publication date: August 2013)
A blind deconvolution approach to high-resolution mapping of transcription factor binding sites from ChIP-seq data

scientific article
Mechanisms of intron gain and loss in Cryptococcus

scientific article
A high-density single nucleotide polymorphism map for Neurospora crassa

scientific article
Comparative analysis of Mycobacterium and related Actinomycetes yields insight into the evolution of Mycobacterium tuberculosis pathogenesis

scientific article
ChIP-Seq and the Complexity of Bacterial Transcriptional Regulation

scientific article published on January 1, 2013
Reconstruction and validation of a genome-scale metabolic model for the filamentous fungus Neurospora crassa using FARM

scientific article (publication date: 2013)
Genome-wide characterization of light-regulated genes in Neurospora crassa.

scientific article
Modulation and vectorial summation of the spinalized frog's hindlimb end-point force produced by intraspinal electrical stimulation of the cord

scientific article published on 01 March 2001
Conrad: gene prediction using conditional random fields.

scientific article published on 9 August 2007

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