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Authors whose works are in public domain in at least one jurisdiction

List of works by Harm van Bakel

1-50 of 89 results

Determination and inference of eukaryotic transcription factor sequence specificity

scientific article

A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters

scientific article

Most "dark matter" transcripts are associated with known genes

scientific article published in May 2010

Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes

scientific article published on 25 April 2006

Mediator expression profiling epistasis reveals a signal transduction pathway with antagonistic submodules and highly specific downstream targets

scientific article

Characterization of the human ESC transcriptome by hybrid sequencing

scientific article

The draft genome and transcriptome of Cannabis sativa

scientific article

The PsychENCODE project

scientific article

Large-scale genetic perturbations reveal regulatory networks and an abundance of gene-specific repressors.

scientific article

Monitoring global messenger RNA changes in externally controlled microarray experiments.

scientific article

Lsr2 is a nucleoid-associated protein that targets AT-rich sequences and virulence genes in Mycobacterium tuberculosis

scientific article

Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder

scientific article

Analysis of Escherichia coli RNase E and RNase III activity in vivo using tiling microarrays

scientific article

Two-color cell array screen reveals interdependent roles for histone chaperones and a chromatin boundary regulator in histone gene repression

scientific article

A gene-specific requirement of RNA polymerase II CTD phosphorylation for sexual differentiation in S. pombe

scientific article published on 3 June 2010

Cooperative action of NC2 and Mot1p to regulate TATA-binding protein function across the genome

scientific article

A compendium of nucleosome and transcript profiles reveals determinants of chromatin architecture and transcription

scientific article

Origins of the 2009 H1N1 influenza pandemic in swine in Mexico

scientific article

Establishing legitimacy and function in the new transcriptome

scientific article

Topoisomerase 1 inhibition suppresses inflammatory genes and protects from death by inflammation.

scientific article

Sequence specificity is obtained from the majority of modular C2H2 zinc-finger arrays

scientific article

Targeting Viral Proteostasis Limits Influenza Virus, HIV, and Dengue Virus Infection

scientific article published on January 2016

Interplay of host microbiota, genetic perturbations, and inflammation promotes local development of intestinal neoplasms in mice

scientific article

In control: systematic assessment of microarray performance

scientific article published in October 2004

Gene expression profiling and phenotype analyses of S. cerevisiae in response to changing copper reveals six genes with new roles in copper and iron metabolism

scientific article

Global transcriptional responses of fission and budding yeast to changes in copper and iron levels: a comparative study.

scientific article

Cdk11-cyclinL controls the assembly of the RNA polymerase II mediator complex

scientific article

Global analysis of SUMO chain function reveals multiple roles in chromatin regulation

scientific article published on April 2013

Improved genome-wide localization by ChIP-chip using double-round T7 RNA polymerase-based amplification.

scientific article published on 07 January 2008

Gene expression profiling of liver cells after copper overload in vivo and in vitro reveals new copper-regulated genes

scientific article published on 9 January 2007

A systematic characterization of Cwc21, the yeast ortholog of the human spliceosomal protein SRm300.

scientific article

Transmission of methicillin-resistant Staphylococcus aureus via deceased donor liver transplantation confirmed by whole genome sequencing

scientific article

Restriction of histone gene transcription to S phase by phosphorylation of a chromatin boundary protein.

scientific article

Neutrophil Recruitment and Barrier Impairment in Celiac Disease: A Genomic Study

article published in 2007

The RNA Exosome Syncs IAV-RNAPII Transcription to Promote Viral Ribogenesis and Infectivity

scientific article published on May 2017

Multi-platform 'Omics Analysis of Human Ebola Virus Disease Pathogenesis

scientific article published on 15 November 2017

Timing of transcriptional quiescence during gametogenesis is controlled by global histone H3K4 demethylation

scientific article

TEAM: a tool for the integration of expression, and linkage and association maps

scientific article

Introductions and early spread of SARS-CoV-2 in the New York City area

scientific article published on 29 May 2020

Senataxin suppresses the antiviral transcriptional response and controls viral biogenesis

scientific article

A novel germline mutation of PTEN associated with brain tumours of multiple lineages

scientific article

A unified model for yeast transcript definition

scientific article published on 29 October 2013

A physical and genetic map of identifies extensive rearrangement at the THC/CBD acid synthase locus

scientific article published on 08 November 2018

Response to “The Reality of Pervasive Transcription”

scientific article

The FaceBase Consortium: a comprehensive resource for craniofacial researchers

scientific article published on 10 June 2016

Fission yeast Cdk7 controls gene expression through both its CAK and C-terminal domain kinase activities

scientific article

Whole-genome sequencing identifies emergence of a quinolone resistance mutation in a case of Stenotrophomonas maltophilia bacteremia.

scientific article

High capsid-genome correlation facilitates creation of AAV libraries for directed evolution

scientific article

BCL11B expression in intramembranous osteogenesis during murine craniofacial suture development

scientific article published on 12 December 2014

Prothymosin α variants isolated from CD8+ T cells and cervicovaginal fluid suppress HIV-1 replication through type I interferon induction

scientific article published on 17 November 2014