List of works - Christian von Mering

STRING v10: protein-protein interaction networks, integrated over the tree of life

scientific article (publication date: 2015)

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

scientific article (publication date: 2013)

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

scientific article

The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible

scientific article published on 18 October 2016

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

scientific article

STRING 8--a global view on proteins and their functional interactions in 630 organisms

scientific article

Toward Automatic Reconstruction of a Highly Resolved Tree of Life

scientific article

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

scientific article published on 22 November 2018

STRING: a database of predicted functional associations between proteins

scientific article

Salmonella enterica serovar typhimurium exploits inflammation to compete with the intestinal microbiota

scientific article

STRING: known and predicted protein-protein associations, integrated and transferred across organisms

scientific article

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

scientific article (publication date: 17 November 2015)

Immunity-related genes and gene families in Anopheles gambiae

scientific article published in October 2002

STITCH: interaction networks of chemicals and proteins

scientific article

STRING 7--recent developments in the integration and prediction of protein interactions

scientific article

The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data

scientific article (publication date: February 2004)

Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster

scientific article (publication date: 4 October 2002)

Expression of amino-terminally truncated PrP in the mouse leading to ataxia and specific cerebellar lesions

scientific article published in April 1998

eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges

scientific article

Community proteogenomics reveals insights into the physiology of phyllosphere bacteria

scientific article published on 04 September 2009

eggNOG v4.0: nested orthology inference across 3686 organisms

scientific article (publication date: December 2013)

PaxDb, a database of protein abundance averages across all three domains of life

scientific article

Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper

scientific article published on 29 April 2017

STITCH 4: integration of protein-chemical interactions with user data

scientific article

Like will to like: abundances of closely related species can predict susceptibility to intestinal colonization by pathogenic and commensal bacteria

scientific article

A global network of coexisting microbes from environmental and whole-genome sequence data

scientific article

Prediction of effective genome size in metagenomic samples

scientific article published on January 2007

eggNOG: automated construction and annotation of orthologous groups of genes

scientific article (publication date: 23 December 2007)

STITCH 2: an interaction network database for small molecules and proteins

scientific article (publication date: 2010)

Phosphoproteomic analysis reveals interconnected system-wide responses to perturbations of kinases and phosphatases in yeast

scientific article

Quantitative Phylogenetic Assessment of Microbial Communities in Diverse Environments

scientific article (publication date: 23 February 2007)

STITCH 5: augmenting protein–chemical interaction networks with tissue and affinity data

scientific article (publication date: 20 November 2015)

Arabidopsis female gametophyte gene expression map reveals similarities between plant and animal gametes

scientific article

Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

scientific article published on 22 December 2011

The microbiota mediates pathogen clearance from the gut lumen after non-typhoidal Salmonella diarrhea

scientific article (publication date: 2010)

Pathogens and host immunity in the ancient human oral cavity

scientific article (publication date: April 2014)

eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations

scientific article

STITCH 3: zooming in on protein-chemical interactions

scientific article (publication date: 9 November 2011)

Environments shape the nucleotide composition of genomes

scientific article

Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes

scientific article

Protein interaction networks from yeast to human

scientific article (publication date: June 2004)

Version 4.0 of PaxDb: Protein abundance data, integrated across model organisms, tissues, and cell-lines.

scientific article published on 5 February 2015

Analysis of genomic context: prediction of functional associations from conserved bidirectionally transcribed gene pairs

scientific article (publication date: July 2004)

Microbiota-derived hydrogen fuels Salmonella typhimurium invasion of the gut ecosystem

scientific article published in December 2013

Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat

scientific article published on 3 June 2008

Genome evolution reveals biochemical networks and functional modules

scientific article

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

scientific article published on 05 February 2020

MLTreeMap--accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies

scientific article

Standardized benchmarking in the quest for orthologs

scientific article (publication date: 4 April 2016)

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

scientific article published on 01 January 2019

List of works by Christian von Mering

STRING v10: protein-protein interaction networks, integrated over the tree of life

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

STRING 8--a global view on proteins and their functional interactions in 630 organisms

Toward Automatic Reconstruction of a Highly Resolved Tree of Life

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

STRING: a database of predicted functional associations between proteins

Salmonella enterica serovar typhimurium exploits inflammation to compete with the intestinal microbiota

STRING: known and predicted protein-protein associations, integrated and transferred across organisms

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

Immunity-related genes and gene families in Anopheles gambiae

STITCH: interaction networks of chemicals and proteins

STRING 7--recent developments in the integration and prediction of protein interactions

The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data

Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster

Expression of amino-terminally truncated PrP in the mouse leading to ataxia and specific cerebellar lesions

eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges

Community proteogenomics reveals insights into the physiology of phyllosphere bacteria

eggNOG v4.0: nested orthology inference across 3686 organisms

PaxDb, a database of protein abundance averages across all three domains of life

Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper

STITCH 4: integration of protein-chemical interactions with user data

Like will to like: abundances of closely related species can predict susceptibility to intestinal colonization by pathogenic and commensal bacteria

A global network of coexisting microbes from environmental and whole-genome sequence data

Prediction of effective genome size in metagenomic samples

eggNOG: automated construction and annotation of orthologous groups of genes

STITCH 2: an interaction network database for small molecules and proteins

Phosphoproteomic analysis reveals interconnected system-wide responses to perturbations of kinases and phosphatases in yeast

Quantitative Phylogenetic Assessment of Microbial Communities in Diverse Environments

STITCH 5: augmenting protein–chemical interaction networks with tissue and affinity data

Arabidopsis female gametophyte gene expression map reveals similarities between plant and animal gametes

Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

The microbiota mediates pathogen clearance from the gut lumen after non-typhoidal Salmonella diarrhea

Pathogens and host immunity in the ancient human oral cavity

eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations

STITCH 3: zooming in on protein-chemical interactions

Environments shape the nucleotide composition of genomes

Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes

Protein interaction networks from yeast to human

Version 4.0 of PaxDb: Protein abundance data, integrated across model organisms, tissues, and cell-lines.

Analysis of genomic context: prediction of functional associations from conserved bidirectionally transcribed gene pairs

Microbiota-derived hydrogen fuels Salmonella typhimurium invasion of the gut ecosystem

Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat

Genome evolution reveals biochemical networks and functional modules

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

MLTreeMap--accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies

Standardized benchmarking in the quest for orthologs

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses