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List of works by Marc Robinson-Rechavi

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The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations

scientific article
How much does the amphioxus genome represent the ancestor of chordates?

scientific article published on February 28, 2012
A protein interaction atlas for the nuclear receptors: properties and quality of a hub-based dimerisation network

scientific article published on 31 July 2007
Molecular signaling in zebrafish development and the vertebrate phylotypic period

scientific article
Evolution of the epithelial sodium channel and the sodium pump as limiting factors of aldosterone action on sodium transport

scientific article published on 10 May 2011
Structural and evolutionary innovation of the heterodimerization interface between USP and the ecdysone receptor ECR in insects

scientific article
Evidence for an episodic model of protein sequence evolution

scientific article published on August 2009
vHOG, a multispecies vertebrate ontology of homologous organs groups

scientific article published on 27 January 2012
An ontology to clarify homology-related concepts

Large-scale analysis of orthologs and paralogs under covarion-like and constant-but-different models of amino acid evolution

scientific article
Sequencing and characterizing the genome of Estrella lausannensis as an undergraduate project: training students and biological insights

scientific article published on 19 February 2015
Correcting for the bias due to expression specificity improves the estimation of constrained evolution of expression between mouse and human

scientific article
Optimization strategies for fast detection of positive selection on phylogenetic trees

scientific article published on 23 January 2014
Selective Constraints on Coding Sequences of Nervous System Genes Are a Major Determinant of Duplicate Gene Retention in Vertebrates

scientific article published on 16 July 2017
Meta-analysis of estrogen response in MCF-7 distinguishes early target genes involved in signaling and cell proliferation from later target genes involved in cell cycle and DNA repair

scientific article
Update of NUREBASE: nuclear hormone receptor functional genomics

scientific article published on January 2004
Inventing a sex-specific gene: a conserved role of DMRT1 in teleost fishes plus a recent duplication in the medaka Oryzias latipes resulted in DMY.

scientific article published in January 2003
Recent advances in biocuration: meeting report from the Fifth International Biocuration Conference

scientific article (publication date: 2012)
Homolonto: generating homology relationships by pairwise alignment of ontologies and application to vertebrate anatomy

scientific article
Detecting patterns of species diversification in the presence of both rate shifts and mass extinctions

scientific article
The challenge of modeling nuclear receptor regulatory networks in mammalian cells

scientific article published on July 2010
Orthologues of the Drosophila melanogaster E75 molting control gene in the filarial parasites Brugia malayi and Dirofilaria immitis

scientific article published on 2 September 2007
IQRray, a new method for Affymetrix microarray quality control, and the homologous organ conservation score, a new benchmark method for quality control metrics

scientific article
BgeeDB, an R package for retrieval of curated expression datasets and for gene list expression localization enrichment tests

scientific article published on 23 November 2016
Inference of Evolutionary Forces Acting on Human Biological Pathways

scientific article published on 13 May 2015
Impact of changes in GC content on the silent molecular clock in murids

scientific article published on 01 December 1997
gcodeml: a Grid-enabled tool for detecting positive selection in biological evolution.

scientific article published in January 2012
Comparative modular analysis of gene expression in vertebrate organs

scientific article
Nuclear gene LCAT supports rodent monophyly

scientific article (publication date: September 2000)
The expansion of amino-acid repeats is not associated to adaptive evolution in mammalian genes

scientific article
Uncovering hidden duplicated content in public transcriptomics data

scientific article
Adaptive Evolution of Animal Proteins over Development: Support for the Darwin Selection Opportunity Hypothesis of Evo-Devo

scientific article published on 01 December 2018
Developmental Constraints on Genome Evolution in Four Bilaterian Model Species

scientific article published in 2018
Bioinformatics of nuclear receptors

scientific article published on 01 January 2003
Sex differentiation in grayling (Salmonidae) goes through an all-male stage and is delayed in genetic males who instead grow faster

scientific article
The Genome of the Toluene-Degrading Pseudomonas veronii Strain 1YdBTEX2 and Its Differential Gene Expression in Contaminated Sand

scientific article
Determinants of protein evolutionary rates in light of ENCODE functional genomics

Sex-specific changes in gene expression in response to estrogen pollution around the onset of sex differentiation in grayling (Salmonidae)

scientific article published on 15 July 2019
Re: Revisiting recent challenges to the ancient fish-specific genome duplication hypothesis

The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals

scientific article published on 10 October 2020
No evidence for the radiation time lag model after whole genome duplications in Teleostei

scientific article
Genomic changes underlying host specialization in the bee gut symbiont Lactobacillus Firm5

scientific article published on 29 May 2019
Large-Scale Comparative Analysis of Codon Models Accounting for Protein and Nucleotide Selection

scientific article published in 2019
IQRray, a new method for Affymetrix microarray quality control, and the homologous organ conservation score, a new benchmark method for quality control metrics

scientific article published on 03 July 2016
Bioinformatics of Nuclear Receptors

article published in 2003
USAGE OPTIMIZATION OF UNEVENLY SAMPLED DATA THROUGH THE COMBINATION OF QUARTET TREES: A EUTHERIAN DRAFT PHYLOGENY BASED ON 640 NUCLEAR AND MITOCHONDRIAL PROTEINS

scholarly article by Marc Robinson-Rechavi & DAN GRAUR published 1 January 2001 in Israel Journal of Zoology
State aggregation for fast likelihood computations in molecular evolution

scientific article
Low Rate of Somatic Mutations in a Long-Lived Oak Tree

Repeated Evolution of Asexuality Involves Convergent Gene Expression Changes

scientific article published on 01 February 2019
Perspective: from molecular endocrinology of mouse to genomic endocrinology of animals

scientific article

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