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List of works by Kristina Hanspers

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Integration of biological networks and gene expression data using Cytoscape

scientific article (publication date: 2007)
WikiPathways: pathway editing for the people

research paper from 2008 about the WikiPathways database
WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research

scientific article published on 10 November 2017
WikiPathways: building research communities on biological pathways

scientific article (publication date: 2012)
Presenting and exploring biological pathways with PathVisio

scientific article
WikiPathways: capturing the full diversity of pathway knowledge

research paper from 2016 about the WikiPathways database
GenMAPP 2: new features and resources for pathway analysis

scientific article published on 24 June 2007
GO-Elite: a flexible solution for pathway and ontology over-representation

scientific article
The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services

scientific article (publication date: 4 January 2010)
Spotted long oligonucleotide arrays for human gene expression analysis.

scientific article published on 12 June 2003
Mining biological pathways using WikiPathways web services

scientific article
WikiPathways: connecting communities

scientific article published on 19 November 2020
Alternative splicing in the differentiation of human embryonic stem cells into cardiac precursors

scientific article
Wikidata as a knowledge graph for the life sciences

scientific article published on 17 March 2020
Gene expression profiles during human CD4+ T cell differentiation

scientific article published on 21 June 2004
Reactome from a WikiPathways Perspective

scientific article (publication date: May 2016)
Increased DNA microarray hybridization specificity using sscDNA targets

scientific article
Extracellular RNAs Are Associated With Insulin Resistance and Metabolic Phenotypes

scientific article published on 9 February 2017
A system-based approach to interpret dose- and time-dependent microarray data: quantitative integration of gene ontology analysis for risk assessment.

scientific article
Mosaic: making biological sense of complex networks

scientific article
Fibrin-targeting immunotherapy protects against neuroinflammation and neurodegeneration

scientific article published on 15 October 2018
exRNA Atlas Analysis Reveals Distinct Extracellular RNA Cargo Types and Their Carriers Present across Human Biofluids

scientific article published on 01 April 2019
NOA: a cytoscape plugin for network ontology analysis

scientific article
Modeling insertional mutagenesis using gene length and expression in murine embryonic stem cells

scientific article published on 18 July 2007
MicroRNAs Associated With Reverse Left Ventricular Remodeling in Humans Identify Pathways of Heart Failure Progression

scientific article published in February 2018
COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms

journal article from 'Molecular Systems Biology' published in 2021
Transcriptional profiling and therapeutic targeting of oxidative stress in neuroinflammation

scientific article published on 13 April 2020
Pathway information extracted from 25 years of pathway figures

scientific article published on 09 November 2020
Ten simple rules for creating reusable pathway models for computational analysis and visualization

scientific article published on 19 August 2021
Author response: Wikidata as a knowledge graph for the life sciences

scholarly article, peer review and author response published on 24 January 2020
Identifying Genes in Published Pathway Figure Images

article
COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms

Author Correction: Transcriptional profiling and therapeutic targeting of oxidative stress in neuroinflammation

scientific article published on 13 July 2020
Wikidata as a FAIR knowledge graph for the life sciences

scholarly article posted as a preprint in BioRxiv on 11 February 2020
An Introduction to Pathway Analysis with GenMAPP

BioThings Explorer: a query engine for a federated knowledge graph of biomedical APIs

scientific article published in September 2023
An approach for collaborative development of a federated biomedical knowledge graph-based question-answering system: Question-of-the-Month challenges

scientific article published in 2023
CRISPR screens decode cancer cell pathways that trigger γδ T cell detection

scientific article published on 30 August 2023
WikiPathways 2024: next generation pathway database

scientific article published on 6 November 2023

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