List of works - Julie Poulain

Enterotypes of the human gut microbiome

scientific article

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

scientific article

Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

scientific article

The genome of the mesopolyploid crop species Brassica rapa

scientific article (publication date: 28 August 2011)

Ocean plankton. Structure and function of the global ocean microbiome

scientific article published on May 2015

The Medicago genome provides insight into the evolution of rhizobial symbioses

scientific article

Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia

scientific article

Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean

scientific article published on May 2015

Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

scientific article

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

scientific article

The Ectocarpus genome and the independent evolution of multicellularity in brown algae

scientific article

Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea

scientific article

The genome of Theobroma cacao

scientific article

Structural and functional partitioning of bread wheat chromosome 3B.

scientific article

Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations

scientific article

A role for RNAi in the selective correction of DNA methylation defects

scientific article published on 29 January 2009

Comparative analysis of Acinetobacters: three genomes for three lifestyles

scientific article published on 19 March 2008

Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses

scientific article

The genome sequence of the model ascomycete fungus Podospora anserina

scientific article

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication

scientific article (publication date: July 2014)

Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga

scientific article

Plankton networks driving carbon export in the oligotrophic ocean

scientific article

Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate

scientific article (publication date: 3 December 2010)

Comparative genomics of protoploid Saccharomycetaceae

scientific article

The transcriptome of the arbuscular mycorrhizal fungus Glomus intraradices (DAOM 197198) reveals functional tradeoffs in an obligate symbiont

scientific article

Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida

scientific article

Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities

scientific article published on 18 September 2013

Insights into global diatom distribution and diversity in the world's ocean

scientific article

Capturing the mutational landscape of the beta-lactamase TEM-1.

scientific article published on 22 July 2013

Predicted effector molecules in the salivary secretome of the pea aphid (Acyrthosiphon pisum): a dual transcriptomic/proteomic approach

scientific article

mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus

scientific article

Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes

scientific article

An Expressed Sequence Tag collection from the male antennae of the Noctuid moth Spodoptera littoralis: a resource for olfactory and pheromone detection research

scientific article

Comparative genomics of emerging pathogens in the Candida glabrata clade

scientific article

Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage

scientific article

Genome sequence of the stramenopile Blastocystis, a human anaerobic parasite

scientific article

Pichia sorbitophila, an Interspecies Yeast Hybrid, Reveals Early Steps of Genome Resolution After Polyploidization

scientific article published on February 2012

The Paramecium germline genome provides a niche for intragenic parasitic DNA: evolutionary dynamics of internal eliminated sequences

scientific article

High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies

scientific article

Candidate chemosensory genes in female antennae of the noctuid moth Spodoptera littoralis

scientific article

454-pyrosequencing of Coffea arabica leaves infected by the rust fungus Hemileia vastatrix reveals in planta-expressed pathogen-secreted proteins and plant functions in a late compatible plant-rust interaction.

scientific article published on June 2011

The venom composition of the parasitic wasp Chelonus inanitus resolved by combined expressed sequence tags analysis and proteomic approach

scientific article

De novo sequencing of Astyanax mexicanus surface fish and Pachón cavefish transcriptomes reveals enrichment of mutations in cavefish putative eye genes

scientific article

Extensive inter- and intraspecific venom variation in closely related parasites targeting the same host: the case of Leptopilina parasitoids of Drosophila.

scientific article published on 2 April 2013

The streamlined genome of Phytomonas spp. relative to human pathogenic kinetoplastids reveals a parasite tailored for plants

scientific article

Atlas of gene expression in the mouse kidney: new features of glomerular parietal cells

scientific article

Complete genome sequence of Streptomyces cattleya NRRL 8057, a producer of antibiotics and fluorometabolites

scientific article

The small RNA diversity from Medicago truncatula roots under biotic interactions evidences the environmental plasticity of the miRNAome

scientific article

Degeneration of the nonrecombining regions in the mating-type chromosomes of the anther-smut fungi

scientific article

Convergent Evolution of Endosymbiont Differentiation in Dalbergioid and Inverted Repeat-Lacking Clade Legumes Mediated by Nodule-Specific Cysteine-Rich Peptides

scientific article published on 18 August 2015

List of works by Julie Poulain

Enterotypes of the human gut microbiome

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

The genome of the mesopolyploid crop species Brassica rapa

Ocean plankton. Structure and function of the global ocean microbiome

The Medicago genome provides insight into the evolution of rhizobial symbioses

Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia

Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean

Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

The Ectocarpus genome and the independent evolution of multicellularity in brown algae

Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea

The genome of Theobroma cacao

Structural and functional partitioning of bread wheat chromosome 3B.

Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations

A role for RNAi in the selective correction of DNA methylation defects

Comparative analysis of Acinetobacters: three genomes for three lifestyles

Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses

The genome sequence of the model ascomycete fungus Podospora anserina

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication

Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga

Plankton networks driving carbon export in the oligotrophic ocean

Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate

Comparative genomics of protoploid Saccharomycetaceae

The transcriptome of the arbuscular mycorrhizal fungus Glomus intraradices (DAOM 197198) reveals functional tradeoffs in an obligate symbiont

Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida

Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities

Insights into global diatom distribution and diversity in the world's ocean

Capturing the mutational landscape of the beta-lactamase TEM-1.

Predicted effector molecules in the salivary secretome of the pea aphid (Acyrthosiphon pisum): a dual transcriptomic/proteomic approach

mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus

Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes

An Expressed Sequence Tag collection from the male antennae of the Noctuid moth Spodoptera littoralis: a resource for olfactory and pheromone detection research

Comparative genomics of emerging pathogens in the Candida glabrata clade

Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage

Genome sequence of the stramenopile Blastocystis, a human anaerobic parasite

Pichia sorbitophila, an Interspecies Yeast Hybrid, Reveals Early Steps of Genome Resolution After Polyploidization

The Paramecium germline genome provides a niche for intragenic parasitic DNA: evolutionary dynamics of internal eliminated sequences

High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies

Candidate chemosensory genes in female antennae of the noctuid moth Spodoptera littoralis

454-pyrosequencing of Coffea arabica leaves infected by the rust fungus Hemileia vastatrix reveals in planta-expressed pathogen-secreted proteins and plant functions in a late compatible plant-rust interaction.

The venom composition of the parasitic wasp Chelonus inanitus resolved by combined expressed sequence tags analysis and proteomic approach

De novo sequencing of Astyanax mexicanus surface fish and Pachón cavefish transcriptomes reveals enrichment of mutations in cavefish putative eye genes

Extensive inter- and intraspecific venom variation in closely related parasites targeting the same host: the case of Leptopilina parasitoids of Drosophila.

The streamlined genome of Phytomonas spp. relative to human pathogenic kinetoplastids reveals a parasite tailored for plants

Atlas of gene expression in the mouse kidney: new features of glomerular parietal cells

Complete genome sequence of Streptomyces cattleya NRRL 8057, a producer of antibiotics and fluorometabolites

The small RNA diversity from Medicago truncatula roots under biotic interactions evidences the environmental plasticity of the miRNAome

Degeneration of the nonrecombining regions in the mating-type chromosomes of the anther-smut fungi

Convergent Evolution of Endosymbiont Differentiation in Dalbergioid and Inverted Repeat-Lacking Clade Legumes Mediated by Nodule-Specific Cysteine-Rich Peptides