List of works - Friederike Ehrhart

WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research

scientific article published on 10 November 2017

A resource to explore the discovery of rare diseases and their causative genes

scientific article

Towards a medically approved technology for alginate-based microcapsules allowing long-term immunoisolated transplantation

scientific article

CyTargetLinker app update: A flexible solution for network extension in Cytoscape

scientific article published on 14 June 2018

WikiPathways: connecting communities

scientific article published on 19 November 2020

Intracellular delivery of carbohydrates into mammalian cells through swelling-activated pathways

scientific article published in July 2004

Rett syndrome - biological pathways leading from MECP2 to disorder phenotypes

scientific article (publication date: 25 November 2016)

Physical and biological properties of barium cross-linked alginate membranes

scientific article (publication date: March 2007)

Alginate encapsulation as a novel strategy for the cryopreservation of neurospheres

scientific article published in October 2010

Cryopreservation of adherent cells: strategies to improve cell viability and function after thawing

scientific article published in September 2009

Physicochemical features of ultra-high viscosity alginates

scientific article (publication date: May 2009)

A data fusion pipeline for generating and enriching Adverse Outcome Pathway descriptions

scientific article published on 15 November 2017

Integration among databases and data sets to support productive nanotechnology: challenges and recommendations

journal article published in 2018

Current developments in the genetics of Rett and Rett-like syndrome

scientific article published on 4 December 2017

Review and gap analysis: molecular pathways leading to fetal alcohol spectrum disorders

scientific article published on 11 June 2018

Low maternal melatonin level increases autism spectrum disorder risk in children

scientific article published on 28 February 2018

A comparative study of freezing single cells and spheroids: towards a new model system for optimizing freezing protocols for cryobanking of human tumours

scientific article

Integrated analysis of human transcriptome data for Rett syndrome finds a network of involved genes

scientific article published on 25 March 2019

Alterations in Human Liver Metabolome during Prolonged Cryostorage

scientific article

MECP2 variation in Rett syndrome - an overview of current coverage of genetic and phenotype data within existing databases

scholarly article from 2018

CyTargetLinker app update: A flexible solution for network extension in Cytoscape

Magnetic separation of encapsulated islet cells labeled with superparamagnetic iron oxide nano particles.

scientific article published on 23 June 2013

Nanopublications: A Growing Resource of Provenance-Centric Scientific Linked Data

Multiphoton microscopy for the in-situ investigation of cellular processes and integrity in cryopreservation

scientific article

Biocompatible coating of encapsulated cells using ionotropic gelation

scientific article

UHV-alginate as matrix for neurotrophic factor producing cells--a novel biomaterial for cochlear implant optimization to preserve inner ear neurons from degeneration

scientific article published on August 2013

Dispensing of very low volumes of ultra high viscosity alginate gels: a new tool for encapsulation of adherent cells and rapid prototyping of scaffolds and implants

scientific article published on January 2009

Beyond Pathway Analysis: Identification of Active Subnetworks in Rett Syndrome

scientific article published on 21 February 2019

New insights in Rett syndrome using pathway analysis for transcriptomics data

scientific article

The individual-cell-based cryo-chip for the cryopreservation, manipulation and observation of spatially identifiable cells. II: functional activity of cryopreserved cells

scientific article

COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms

journal article from 'Molecular Systems Biology' published in 2021

Real-time 3-D dark-field microscopy for the validation of the cross-linking process of alginate microcapsules

scientific article published in November 2005

The individual-cell-based cryo-chip for the cryopreservation, manipulation and observation of spatially identifiable cells. I: methodology

scientific article

Precision medicine in circadian rhythm sleep–wake disorders: current state and future perspectives

scientific article (publication date: 24 January 2017)

Prader-Willi Syndrome and Angelman Syndrome: Visualisation of the molecular pathways for two chromosomal disorders.

scientific article published on 9 February 2018

Overlap of vitamin A and vitamin D target genes with CAKUT-related processes

publication published on 18 May 2021

Integrated analysis of human transcriptome data for Rett syndrome finds a network of involved genes

article

Nanopublications: A Growing Resource of Provenance-Centric Scientific Linked Data

article published in 2018

Ten simple rules for creating reusable pathway models for computational analysis and visualization

scientific article published on 19 August 2021

Providing gene-to-variant and variant-to-gene database identifier mappings to use with BridgeDb mapping services

A catalogue of 863 Rett-syndrome-causing MECP2 mutations and lessons learned from data integration

scientific article published on 15 January 2021

COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms

Rett syndrome - biological pathways leading from MECP2 to disorder phenotypes

Overlap of vitamin A and vitamin D target genes with CAKUT-related processes

scientific article, version 1

A new validation method for clinical grade micro-encapsulation: quantitative high speed video analysis of alginate capsule

scholarly article

History of rare diseases and their genetic causes - a data driven approach

A formalization of one of the main claims of “Overlap of vitamin A and vitamin D target genes with CAKUT-related processes” by Ozisik et al. 20211

scientific article published on 22 March 2022

Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches

scientific article published on 13 February 2024

Ten simple rules to make your publication look better

scientific article

Clustering Schizophrenia Genes by Their Temporal Expression Patterns Aids Functional Interpretation

scientific article published on 12 October 2023

List of works by Friederike Ehrhart

WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research

A resource to explore the discovery of rare diseases and their causative genes

Towards a medically approved technology for alginate-based microcapsules allowing long-term immunoisolated transplantation

CyTargetLinker app update: A flexible solution for network extension in Cytoscape

WikiPathways: connecting communities

Intracellular delivery of carbohydrates into mammalian cells through swelling-activated pathways

Rett syndrome - biological pathways leading from MECP2 to disorder phenotypes

Physical and biological properties of barium cross-linked alginate membranes

Alginate encapsulation as a novel strategy for the cryopreservation of neurospheres

Cryopreservation of adherent cells: strategies to improve cell viability and function after thawing

Physicochemical features of ultra-high viscosity alginates

A data fusion pipeline for generating and enriching Adverse Outcome Pathway descriptions

Integration among databases and data sets to support productive nanotechnology: challenges and recommendations

Current developments in the genetics of Rett and Rett-like syndrome

Review and gap analysis: molecular pathways leading to fetal alcohol spectrum disorders

Low maternal melatonin level increases autism spectrum disorder risk in children

A comparative study of freezing single cells and spheroids: towards a new model system for optimizing freezing protocols for cryobanking of human tumours

Integrated analysis of human transcriptome data for Rett syndrome finds a network of involved genes

Alterations in Human Liver Metabolome during Prolonged Cryostorage

MECP2 variation in Rett syndrome - an overview of current coverage of genetic and phenotype data within existing databases

CyTargetLinker app update: A flexible solution for network extension in Cytoscape

Magnetic separation of encapsulated islet cells labeled with superparamagnetic iron oxide nano particles.

Nanopublications: A Growing Resource of Provenance-Centric Scientific Linked Data

Multiphoton microscopy for the in-situ investigation of cellular processes and integrity in cryopreservation

Biocompatible coating of encapsulated cells using ionotropic gelation

UHV-alginate as matrix for neurotrophic factor producing cells--a novel biomaterial for cochlear implant optimization to preserve inner ear neurons from degeneration

Dispensing of very low volumes of ultra high viscosity alginate gels: a new tool for encapsulation of adherent cells and rapid prototyping of scaffolds and implants

Beyond Pathway Analysis: Identification of Active Subnetworks in Rett Syndrome

New insights in Rett syndrome using pathway analysis for transcriptomics data

The individual-cell-based cryo-chip for the cryopreservation, manipulation and observation of spatially identifiable cells. II: functional activity of cryopreserved cells

COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms

Real-time 3-D dark-field microscopy for the validation of the cross-linking process of alginate microcapsules

The individual-cell-based cryo-chip for the cryopreservation, manipulation and observation of spatially identifiable cells. I: methodology

Precision medicine in circadian rhythm sleep–wake disorders: current state and future perspectives

Prader-Willi Syndrome and Angelman Syndrome: Visualisation of the molecular pathways for two chromosomal disorders.

Overlap of vitamin A and vitamin D target genes with CAKUT-related processes

Integrated analysis of human transcriptome data for Rett syndrome finds a network of involved genes

Nanopublications: A Growing Resource of Provenance-Centric Scientific Linked Data

Ten simple rules for creating reusable pathway models for computational analysis and visualization

Providing gene-to-variant and variant-to-gene database identifier mappings to use with BridgeDb mapping services

A catalogue of 863 Rett-syndrome-causing MECP2 mutations and lessons learned from data integration

COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms

Rett syndrome - biological pathways leading from MECP2 to disorder phenotypes

Overlap of vitamin A and vitamin D target genes with CAKUT-related processes

A new validation method for clinical grade micro-encapsulation: quantitative high speed video analysis of alginate capsule

History of rare diseases and their genetic causes - a data driven approach

A formalization of one of the main claims of “Overlap of vitamin A and vitamin D target genes with CAKUT-related processes” by Ozisik et al. 20211

Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches

Ten simple rules to make your publication look better

Clustering Schizophrenia Genes by Their Temporal Expression Patterns Aids Functional Interpretation