List of works - George Karypis

Interferon-inducible gene expression signature in peripheral blood cells of patients with severe lupus

scientific article (publication date: 4 March 2003)

Conserved GU-rich elements mediate mRNA decay by binding to CUG-binding protein 1

scientific article published in February 2008

A Fast and High Quality Multilevel Scheme for Partitioning Irregular Graphs

scientific article (publication date: 1998)

Multivariate analysis of cell culture bioprocess data—Lactate consumption as process indicator

scientific article published on September 10, 2012

Profile-based direct kernels for remote homology detection and fold recognition

scientific article published on 27 September 2005

Data clustering in life sciences

scientific article

YASSPP: better kernels and coding schemes lead to improvements in protein secondary structure prediction

scientific article published in August 2006

Transcriptome dynamics-based operon prediction and verification in Streptomyces coelicolor

scientific article

Genome-wide inference of regulatory networks in Streptomyces coelicolor

scientific article

Mining manufacturing data for discovery of high productivity process characteristics

scientific article

Target fishing for chemical compounds using target-ligand activity data and ranking based methods

scientific article

QCRNA 1.0: a database of quantum calculations for RNA catalysis

scientific article published on 3 April 2006

A Boolean algorithm for reconstructing the structure of regulatory networks

scientific article published in October 2004

svmPRAT: SVM-based protein residue annotation toolkit

scientific article

Mining transcriptome data for function-trait relationship of hyper productivity of recombinant antibody

scientific article

Assessing synthetic accessibility of chemical compounds using machine learning methods

scientific article

Multi-assay-based structure-activity relationship models: improving structure-activity relationship models by incorporating activity information from related targets

scientific article

Mining bioprocess data: opportunities and challenges

scientific article

Exploring the transcriptome space of a recombinant BHK cell line through next generation sequencing

scientific article published on November 19, 2013

wCLUTO: a Web-enabled clustering toolkit

scientific article

LIBRUS: combined machine learning and homology information for sequence-based ligand-binding residue prediction

scientific article

Building multiclass classifiers for remote homology detection and fold recognition

scientific article published on 16 October 2006

Common pharmacophore identification using frequent clique detection algorithm

scientific article published in January 2009

Improving homology models for protein-ligand binding sites.

scientific article published in January 2008

Augmenting Chinese hamster genome assembly by identifying regions of high confidence

scientific article published on 4 July 2016

An analysis of information content present in protein-DNA interactions

scientific article published on 01 January 2008

Clustering in Life Sciences

scientific article published on January 1, 2003

Learning preferences of new users in recommender systems

article

Improved machine learning models for predicting selective compounds

scientific article

Item-based collaborative filtering recommendation algorithms

scholarly article

Indirect similarity based methods for effective scaffold-hopping in chemical compounds

scientific article published on 11 April 2008

Pareto optimal pairwise sequence alignment

scientific article published in March 2013

TOPTMH: topology predictor for transmembrane alpha-helices

scientific article published in February 2010

Detecting significant genotype-phenotype association rules in bipolar disorder: market research meets complex genetics

article

fRMSDPred: predicting local RMSD between structural fragments using sequence information

scientific article published on 01 August 2008

Discerning key parameters influencing high productivity and quality through recognition of patterns in process data

scientific article published on November 22, 2011

Effective optimization algorithms for fragment-assembly based protein structure prediction

scientific article

Repurpose Open Data to Discover Therapeutics for COVID-19 using Deep Learning

scientific article published on 12 July 2020

fRMSDPred: predicting local RMSD between structural fragments using sequence information.

scientific article

Data Mining in Bioinformatics (BIOKDD).

scientific article

Macromolecule mass spectrometry: citation mining of user documents

scientific article

Method for effective virtual screening and scaffold-hopping in chemical compounds.

scientific article published in January 2007

Incremental window-based protein sequence alignment algorithms

scientific article published in January 2007

Directed Graphs

Few-shot link prediction via graph neural networks for Covid-19 drug-repurposing

scientific article

First Workshop on Generative AI for Recommender Systems and Personalization

scientific article published on 25 August 2024

Myrinet

article

Partitioning-based clustering for Web document categorization

Finding Frequent Patterns in a Large Sparse Graph*

scientific article published in 2005

The 3rd International Workshop on Interactive and Scalable Information Retrieval Methods for eCommerce (ISIR-eCom 2024)

scientific article published on 04 March 2024

List of works by George Karypis

Interferon-inducible gene expression signature in peripheral blood cells of patients with severe lupus

Conserved GU-rich elements mediate mRNA decay by binding to CUG-binding protein 1

A Fast and High Quality Multilevel Scheme for Partitioning Irregular Graphs

Multivariate analysis of cell culture bioprocess data—Lactate consumption as process indicator

Profile-based direct kernels for remote homology detection and fold recognition

Data clustering in life sciences

YASSPP: better kernels and coding schemes lead to improvements in protein secondary structure prediction

Transcriptome dynamics-based operon prediction and verification in Streptomyces coelicolor

Genome-wide inference of regulatory networks in Streptomyces coelicolor

Mining manufacturing data for discovery of high productivity process characteristics

Target fishing for chemical compounds using target-ligand activity data and ranking based methods

QCRNA 1.0: a database of quantum calculations for RNA catalysis

A Boolean algorithm for reconstructing the structure of regulatory networks

svmPRAT: SVM-based protein residue annotation toolkit

Mining transcriptome data for function-trait relationship of hyper productivity of recombinant antibody

Assessing synthetic accessibility of chemical compounds using machine learning methods

Multi-assay-based structure-activity relationship models: improving structure-activity relationship models by incorporating activity information from related targets

Mining bioprocess data: opportunities and challenges

Exploring the transcriptome space of a recombinant BHK cell line through next generation sequencing

wCLUTO: a Web-enabled clustering toolkit

LIBRUS: combined machine learning and homology information for sequence-based ligand-binding residue prediction

Building multiclass classifiers for remote homology detection and fold recognition

Common pharmacophore identification using frequent clique detection algorithm

Improving homology models for protein-ligand binding sites.

Augmenting Chinese hamster genome assembly by identifying regions of high confidence

An analysis of information content present in protein-DNA interactions

Clustering in Life Sciences

Learning preferences of new users in recommender systems

Improved machine learning models for predicting selective compounds

Item-based collaborative filtering recommendation algorithms

Indirect similarity based methods for effective scaffold-hopping in chemical compounds

Pareto optimal pairwise sequence alignment

TOPTMH: topology predictor for transmembrane alpha-helices

Detecting significant genotype-phenotype association rules in bipolar disorder: market research meets complex genetics

fRMSDPred: predicting local RMSD between structural fragments using sequence information

Discerning key parameters influencing high productivity and quality through recognition of patterns in process data

Effective optimization algorithms for fragment-assembly based protein structure prediction

Repurpose Open Data to Discover Therapeutics for COVID-19 using Deep Learning

fRMSDPred: predicting local RMSD between structural fragments using sequence information.

Data Mining in Bioinformatics (BIOKDD).

Macromolecule mass spectrometry: citation mining of user documents

Method for effective virtual screening and scaffold-hopping in chemical compounds.

Incremental window-based protein sequence alignment algorithms

Directed Graphs

Few-shot link prediction via graph neural networks for Covid-19 drug-repurposing

First Workshop on Generative AI for Recommender Systems and Personalization

Myrinet

Partitioning-based clustering for Web document categorization

Finding Frequent Patterns in a Large Sparse Graph*

The 3rd International Workshop on Interactive and Scalable Information Retrieval Methods for eCommerce (ISIR-eCom 2024)