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List of works by Mark Achtman

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Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica

scientific article
High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi

scientific article published on 27 July 2008
Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype

scientific article published on 9 November 2009
Microevolution and history of the plague bacillus, Yersinia pestis

scientific article published on 21 December 2004
Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity

scientific article published in December 2010
Multilocus sequence typing as a replacement for serotyping in Salmonella enterica

scientific article published in 2012
A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic

scientific article
Evolutionary history of Salmonella typhi

scientific article
Salmonella typhi, the causative agent of typhoid fever, is approximately 50,000 years old.

scientific article published on October 2002
Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis

scientific article published on 27 December 2012
Meningococcal genetic variation mechanisms viewed through comparative analysis of serogroup C strain FAM18.

scientific article published on 21 December 2006
A genomic overview of the population structure of Salmonella

scientific article
Frequent emergence and limited geographic dispersal of methicillin-resistant Staphylococcus aureus

scholarly article
Who ate whom? Adaptive Helicobacter genomic changes that accompanied a host jump from early humans to large felines

scientific article (publication date: July 2006)
CRISPR typing and subtyping for improved laboratory surveillance of Salmonella infections

scientific article (publication date: 2012)
Distinct clones of Yersinia pestis caused the black death

scientific article published in 2010
Recombination and population structure in Salmonella enterica.

scientific article
Parallel independent evolution of pathogenicity within the genus Yersinia

scientific article
A bimodal pattern of relatedness between the Salmonella Paratyphi A and Typhi genomes: convergence or divergence by homologous recombination?

scientific article published on 7 November 2006
Mismatch induced speciation in Salmonella: model and data

scientific article
Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe

scientific article
Transient Darwinian selection in Salmonella enterica serovar Paratyphi A during 450 years of global spread of enteric fever

scientific article
Neutral genomic microevolution of a recently emerged pathogen, Salmonella enterica serovar Agona

scientific article
Evolution and population structure of Salmonella enterica serovar Newport

scientific article
GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens

scientific article published on 26 July 2018
The ubiquitous nature of Listeria monocytogenes clones: a large-scale Multilocus Sequence Typing study

scientific article published on 16 December 2013
Genome sequence of the deep-rooted Yersinia pestis strain Angola reveals new insights into the evolution and pangenome of the plague bacterium

scientific article
Phylogeography and molecular epidemiology of Yersinia pestis in Madagascar

scientific article published on 13 September 2011
Molecular epidemiology of extraintestinal pathogenic Escherichia coli isolates from a regional cohort of elderly patients highlights the prevalence of ST131 strains with increased antimicrobial resistance in both community and hospital care settings

scientific article
High-throughput genotyping of Salmonella enterica serovar Typhi allowing geographical assignment of haplotypes and pathotypes within an urban District of Jakarta, Indonesia

scientific article published on 5 March 2008
The role of China in the global spread of the current cholera pandemic

scientific article
Population structure of the Yersinia pseudotuberculosis complex according to multilocus sequence typing

scientific article published on 27 September 2011
Genomic analysis uncovers a phenotypically diverse but genetically homogeneous Escherichia coli ST131 clone circulating in unrelated urinary tract infections

scientific article
A multiplex single nucleotide polymorphism typing assay for detecting mutations that result in decreased fluoroquinolone susceptibility in Salmonella enterica serovars Typhi and Paratyphi A.

scientific article published on 28 May 2010
Fate of the H-NS-repressed bgl operon in evolution of Escherichia coli

scientific article
Ceftriaxone-resistant salmonella enterica serotype Newport, France.

scientific article published on June 2008
Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia

scientific article published on 19 July 2018
What's in a Name? Species-Wide Whole-Genome Sequencing Resolves Invasive and Noninvasive Lineages of Salmonella enterica Serotype Paratyphi B

scientific article
The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity

scientific article published on 06 December 2019
Genetic variations of live attenuated plague vaccine strains (Yersinia pestis EV76 lineage) during laboratory passages in different countries

scientific article published on 4 June 2014
Revival of Seeliger's historical ‘Special Listeria Culture Collection’

scientific article published on October 18, 2011
Salmonella enterica Serotype Typhi with nonclassical quinolone resistance phenotype.

scientific article
How old are bacterial pathogens?

scientific article
Population structures in the SARA and SARB reference collections of Salmonella enterica according to MLST, MLEE and microarray hybridization.

scientific article published on 16 March 2013
Transforming microbial genotyping: a robotic pipeline for genotyping bacterial strains

scientific article
Distinct Genealogies for Plasmids and Chromosome

scientific article published on December 18, 2014
Correction: CRISPR Typing and Subtyping for Improved Laboratory Surveillance of Salmonella Infections

scientific article
Emergence of human-adapted Salmonella enterica is linked to the Neolithization process

scientific article published on 24 February 2020
Formal Comment to Pettengill: The Time to Most Recent Common Ancestor Does Not (Usually) Approximate the Date of Divergence.

scientific article published on 14 August 2015
Millennia of genomic stability within the invasive Para C Lineage ofSalmonella enterica

article published in 2017

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