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List of works by Andra Waagmeester

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The FAIR Guiding Principles for scientific data management and stewardship

scientific article (publication date: 15 March 2016)
WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research

scientific article published on 10 November 2017
WikiPathways: capturing the full diversity of pathway knowledge

research paper from 2016 about the WikiPathways database
WikiPathways: connecting communities

scientific article published on 19 November 2020
The ChEMBL database as linked open data

scientific article (publication date: 2013)
Wikidata as a semantic framework for the Gene Wiki initiative

scientific article
Identifying sigma factors in Mycobacterium smegmatis by comparative genomic analysis

scientific article published in November 2005
Wikidata as a knowledge graph for the life sciences

scientific article published on 17 March 2020
The public road to high-quality curated biological pathways

scientific article published in October 2008
Wikidata: A platform for data integration and dissemination for the life sciences and beyond

2015 scientific article
FAIR Principles: Interpretations and Implementation Considerations

scholarly article
Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources

scientific article
The application of the open pharmacological concepts triple store (Open PHACTS) to support drug discovery research

scientific article published in 2014
WikiGenomes: an open Web application for community consumption and curation of gene annotation data in Wikidata

scientific article
Applying linked data approaches to pharmacology: Architectural decisions and implementation

scientific article
Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes

scientific article
Addendum: The FAIR Guiding Principles for scientific data management and stewardship

article by Mark D Wilkinson et al published 19 March 2019 in Scientific Data
Using Shape Expressions (ShEx) to Share RDF Data Models and to Guide Curation with Rigorous Validation

scientific article published on 25 May 2019
Scientific Lenses to Support Multiple Views over Linked Chemistry Data

scientific article
The role of bioinformatics in pathway curation

scientific article (publication date: December 2008)
A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses

January 2021 scholarly article
Wikidata as a linked-data hub for Biodiversity data

scientific article published on 18 June 2019
Pathway enrichment based on text mining and its validation on carotenoid and vitamin A metabolism

scientific article
Explicit interaction information from WikiPathways in RDF facilitates drug discovery in the Open PHACTS Discovery Platform

Wikidata as a semantic framework for the Gene Wiki initiative

bioRxiv preprint
Opportunities and challenges presented by Wikidata in the context of biocuration

scientific article (publication date: 29 November 2016)
ChlamBase: a curated model organism database for the Chlamydia research community.

correction
A protocol for adding knowledge to Wikidata, a case report

scientific article published on 07 April 2020
WikiCite: Citations needed for the sum of all human knowledge

Wikimania 2017 talk
Wikidata as an intuitive resource towards semantic data modeling in data FAIRification

scholarly article by Annika Jacobsen published in December 2018
Knowledge graphs and wikidata subsetting

scholarly article by José Emilio Labra Gayo published in April 2021
Ten simple rules for creating reusable pathway models for computational analysis and visualization

scientific article published on 19 August 2021
Explicit interaction information from WikiPathways in RDF facilitates drug discovery in the Open PHACTS Discovery Platform

Author response: Wikidata as a knowledge graph for the life sciences

scholarly article, peer review and author response published on 24 January 2020
The distinction between linguistic and conceptual semantics in medical terminology and its implication for NLP-based knowledge acquisition.

scientific article
Complex Portal 2022: new curation frontiers

scientific article
Using Crowd-curation to Improve Taxon Annotations on the Wikimedia Infrastructure

scientific article published on 18 June 2019
The Distinction between Linguistic and Conceptual Semantics in Medical Terminology and its Implication for NLP-Based Knowledge Acquisition

scientific article published in 1998
Measuring impact in online resources with the CI­number (the CitedIn Number for online impact)

Using Shape Expressions (ShEx) to Share RDF Data Models and to Guide Curation with Rigorous Validation

scholarly article from Zenodo
Wikidata as a FAIR knowledge graph for the life sciences

scholarly article posted as a preprint in BioRxiv on 11 February 2020
Author Correction: A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses

scientific article published in 2023
Fairmetrics/Metrics: Proposed Fair Metrics And Results Of The Metrics Evaluation Questionnaire

scholarly article published in March 2018
Preface

Understanding signaling and metabolic paths using semantified and harmonized information about biological interactions

scientific article published on 18 April 2022
Documenting Biodiversity in Underrepresented Languages using Crowdsourcing

scientific article published on 11 September 2023
Acknowledging contributions to online expert assistance

Linking Data and Descriptions on Moths Using the Wikimedia Ecosystem

conference abstract
Acknowledging contributions to online expert assistance

Wikidata subsetting: Approaches, tools, and evaluation

scholarly article published 2023

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