List of works - David Tudor Jones

The rapid generation of mutation data matrices from protein sequences

scientific article (publication date: June 1992)

The PSIPRED protein structure prediction server

scientific article (publication date: April 2000)

CATH--a hierarchic classification of protein domain structures

scientific article (publication date: 15 August 1997)

Scalable web services for the PSIPRED Protein Analysis Workbench.

scientific article published on 08 June 2013

A new approach to protein fold recognition

scientific article

Classification of intrinsically disordered regions and proteins

scientific article

A model recognition approach to the prediction of all-helical membrane protein structure and topology

scientific article

Protein structure prediction servers at University College London

scientific article

A large-scale evaluation of computational protein function prediction

scientific article

The DISOPRED server for the prediction of protein disorder

scientific article

Protein superfamilies and domain superfolds

scientific article (publication date: 15 December 1994)

PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments

scientific article

Protein annotation and modelling servers at University College London

scientific article

DISOPRED3: precise disordered region predictions with annotated protein-binding activity

scientific article

Transmembrane protein topology prediction using support vector machines

scientific article

Improvement of the GenTHREADER method for genomic fold recognition

scientific article published in May 2003

pGenTHREADER and pDomTHREADER: new methods for improved protein fold recognition and superfamily discrimination

scientific article published on 7 May 2009

The implications of alternative splicing in the ENCODE protein complement

scientific article (publication date: 27 March 2007)

Accurate de novo structure prediction of large transmembrane protein domains using fragment-assembly and correlated mutation analysis

scientific article published on May 29, 2012

Protein evolution with dependence among codons due to tertiary structure

scientific article

A mutation data matrix for transmembrane proteins

scientific article published on February 1994

An expanded evaluation of protein function prediction methods shows an improvement in accuracy

scientific article

Extending CATH: increasing coverage of the protein structure universe and linking structure with function

scientific article

Assessing the impact of secondary structure and solvent accessibility on protein evolution.

scientific article

Prediction of disordered regions in proteins from position specific score matrices

scientific article published on January 1, 2003

Inferring function using patterns of native disorder in proteins

scientific article

What's in a name? Why these proteins are intrinsically disordered: Why these proteins are intrinsically disordered

scientific article

Outcome of a workshop on applications of protein models in biomedical research

scientific article (publication date: 13 February 2009)

Secondary structure prediction with support vector machines

scientific article

Combining protein evolution and secondary structure

scientific article published in May 1996

Predicting metal-binding site residues in low-resolution structural models

scientific article

A structural model for the nucleotide binding domains of the flavocytochrome b-245 beta-chain

scientific article

Rapid protein domain assignment from amino acid sequence using predicted secondary structure

scientific article

Potential energy functions for threading

scientific article

A method for alpha-helical integral membrane protein fold prediction

scientific article published in March 1994

Prediction of hot spot residues at protein-protein interfaces by combining machine learning and energy-based methods

scientific article

Evaluation of predictions in the CASP10 model refinement category

scientific article

Using Evolutionary Trees in Protein Secondary Structure Prediction and Other Comparative Sequence Analyses

Modularity of intrinsic disorder in the human proteome

scientific article

The PSIPRED Protein Analysis Workbench: 20 years on

scientific article published on 01 July 2019

Improved protein structure prediction using potentials from deep learning

scientific article published on 15 January 2020

Predicting Transmembrane Helix Packing Arrangements using Residue Contacts and a Force-Directed Algorithm

scientific article published on March 19, 2010

Protein function prediction by massive integration of evolutionary analyses and multiple data sources

scientific article

Assembling novel protein folds from super-secondary structural fragments

scientific article published on 01 January 2003

Prediction of novel and analogous folds using fragment assembly and fold recognition.

scientific article

BioRAT: extracting biological information from full-length papers.

scientific article published in July 2004

CAFASP-1: critical assessment of fully automated structure prediction methods

scientific article (publication date: 1999)

Insights into the regulation of intrinsically disordered proteins in the human proteome by analyzing sequence and gene expression data.

scientific article

Outcome of a workshop on archiving structural models of biological macromolecules

scientific article

Improving sequence-based fold recognition by using 3D model quality assessment

scientific article published on 14 June 2005

List of works by David Tudor Jones

The rapid generation of mutation data matrices from protein sequences

The PSIPRED protein structure prediction server

CATH--a hierarchic classification of protein domain structures

Scalable web services for the PSIPRED Protein Analysis Workbench.

A new approach to protein fold recognition

Classification of intrinsically disordered regions and proteins

A model recognition approach to the prediction of all-helical membrane protein structure and topology

Protein structure prediction servers at University College London

A large-scale evaluation of computational protein function prediction

The DISOPRED server for the prediction of protein disorder

Protein superfamilies and domain superfolds

PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments

Protein annotation and modelling servers at University College London

DISOPRED3: precise disordered region predictions with annotated protein-binding activity

Transmembrane protein topology prediction using support vector machines

Improvement of the GenTHREADER method for genomic fold recognition

pGenTHREADER and pDomTHREADER: new methods for improved protein fold recognition and superfamily discrimination

The implications of alternative splicing in the ENCODE protein complement

Accurate de novo structure prediction of large transmembrane protein domains using fragment-assembly and correlated mutation analysis

Protein evolution with dependence among codons due to tertiary structure

A mutation data matrix for transmembrane proteins

An expanded evaluation of protein function prediction methods shows an improvement in accuracy

Extending CATH: increasing coverage of the protein structure universe and linking structure with function

Assessing the impact of secondary structure and solvent accessibility on protein evolution.

Prediction of disordered regions in proteins from position specific score matrices

Inferring function using patterns of native disorder in proteins

What's in a name? Why these proteins are intrinsically disordered: Why these proteins are intrinsically disordered

Outcome of a workshop on applications of protein models in biomedical research

Secondary structure prediction with support vector machines

Combining protein evolution and secondary structure

Predicting metal-binding site residues in low-resolution structural models

A structural model for the nucleotide binding domains of the flavocytochrome b-245 beta-chain

Rapid protein domain assignment from amino acid sequence using predicted secondary structure

Potential energy functions for threading

A method for alpha-helical integral membrane protein fold prediction

Prediction of hot spot residues at protein-protein interfaces by combining machine learning and energy-based methods

Evaluation of predictions in the CASP10 model refinement category

Using Evolutionary Trees in Protein Secondary Structure Prediction and Other Comparative Sequence Analyses

Modularity of intrinsic disorder in the human proteome

The PSIPRED Protein Analysis Workbench: 20 years on

Improved protein structure prediction using potentials from deep learning

Predicting Transmembrane Helix Packing Arrangements using Residue Contacts and a Force-Directed Algorithm

Protein function prediction by massive integration of evolutionary analyses and multiple data sources

Assembling novel protein folds from super-secondary structural fragments

Prediction of novel and analogous folds using fragment assembly and fold recognition.

BioRAT: extracting biological information from full-length papers.

CAFASP-1: critical assessment of fully automated structure prediction methods

Insights into the regulation of intrinsically disordered proteins in the human proteome by analyzing sequence and gene expression data.

Outcome of a workshop on archiving structural models of biological macromolecules

Improving sequence-based fold recognition by using 3D model quality assessment