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List of works by Urmas Kõljalg

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Towards a unified paradigm for sequence-based identification of fungi

scientific article
A higher-level phylogenetic classification of the Fungi

scientific article
Fungal biogeography. Global diversity and geography of soil fungi

scientific article
The UNITE database for molecular identification of fungi--recent updates and future perspectives

scientific article published in April 2010
UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi

scientific article
454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases

scientific article published on 15 July 2010
Fungal community analysis by high-throughput sequencing of amplified markers--a user's guide

scientific article
Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective

scientific article published in 2006
High-level classification of the Fungi and a tool for evolutionary ecological analyses

scientific article published on 16 May 2018
The amsterdam declaration on fungal nomenclature

scientific article
Strong host preference of ectomycorrhizal fungi in a Tasmanian wet sclerophyll forest as revealed by DNA barcoding and taxon-specific primers

scientific article
Towards global patterns in the diversity and community structure of ectomycorrhizal fungi

scientific article
Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi

scientific article
DNAqua-Net: Developing new genetic tools for bioassessment and monitoring of aquatic ecosystems in Europe

scientific article (publication date: 29 November 2016)
Regional and local patterns of ectomycorrhizal fungal diversity and community structure along an altitudinal gradient in the Hyrcanian forests of northern Iran

scientific article published on October 11, 2011
The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications

scholarly article by Henrik Nilsson et al published 29 October 2018 in Nucleic Acids Research
High phylogenetic diversity among corticioid homobasidiomycetes

scientific article
Ectomycorrhizal fungi of the Seychelles: diversity patterns and host shifts from the native Vateriopsis seychellarum (Dipterocarpaceae) and Intsia bijuga (Caesalpiniaceae) to the introduced Eucalyptus robusta (Myrtaceae), but not Pinus caribea (Pina

scientific article published in January 2007
A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts

scientific article published on 19 March 2015
Biogeography of ectomycorrhizal fungi associated with alders (Alnus spp.) in relation to biotic and abiotic variables at the global scale

scientific article
Diversity and community structure of ectomycorrhizal fungi in a wooded meadow

scientific article
Parallel evolutionary paths to mycoheterotrophy in understorey Ericaceae and Orchidaceae: ecological evidence for mixotrophy in Pyroleae

scientific article
Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi

scientific article
Diversity and abundance of resupinate thelephoroid fungi as ectomycorrhizal symbionts in Swedish boreal forests

scientific article
Spatial structure and the effects of host and soil environments on communities of ectomycorrhizal fungi in wooded savannas and rain forests of Continental Africa and Madagascar

scientific article published on June 7, 2011
Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS sequences

scientific article
Divergent arbuscular mycorrhizal fungal communities colonize roots of Pulsatilla spp. in boreal Scots pine forest and grassland soils

article by Maarja Öpik et al published 17 November 2003 in New Phytologist
A single European aspen (Populus tremula) tree individual may potentially harbour dozens of Cenococcum geophilum ITS genotypes and hundreds of species of ectomycorrhizal fungi

scientific article
Towards standardization of the description and publication of next-generation sequencing datasets of fungal communities

scientific article published in 2011
Improving ITS sequence data for identification of plant pathogenic fungi

article
Sequence-based classification and identification of Fungi

scientific article
Enzymatic activities and stable isotope patterns of ectomycorrhizal fungi in relation to phylogeny and exploration types in an afrotropical rain forest

scientific article published on July 3, 2012
Forest microsite effects on community composition of ectomycorrhizal fungi on seedlings of Picea abies and Betula pendula

scientific article published on 3 February 2008
Taxonomy based on science is necessary for global conservation

journal article from 'PLOS Biology' published in 2018
Temporal patterns of orchid mycorrhizal fungi in meadows and forests as revealed by 454 pyrosequencing

scientific article published on 24 December 2014
The need for an integrated biodiversity policy support process – Building the European contribution to a global Biodiversity Observation Network (EU BON)

article
Tidying up international nucleotide sequence databases: ecological, geographical and sequence quality annotation of its sequences of mycorrhizal fungi

scientific article
Ectomycorrhizal fungi of exotic pine plantations in relation to native host trees in Iran: evidence of host range expansion by local symbionts to distantly related host taxa

scientific article
Mycorrhizal symbionts of Pisonia grandis and P. sechellarum in Seychelles: identification of mycorrhizal fungi and description of new Tomentella species

scientific article
Global biogeography of the ectomycorrhizal /sebacina lineage (Fungi, Sebacinales) as revealed from comparative phylogenetic analyses

scientific article
Standardizing metadata and taxonomic identification in metabarcoding studies

scientific article published on 31 July 2015
Establishment of ectomycorrhizal fungal community on isolated Nothofagus cunninghamii seedlings regenerating on dead wood in Australian wet temperate forests: does fruit-body type matter?

scientific article
Rangewide analysis of fungal associations in the fully mycoheterotrophic Corallorhiza striata complex (Orchidaceae) reveals extreme specificity on ectomycorrhizal Tomentella (Thelephoraceae) across North America

scientific article published on 11 March 2010
Fruiting body-guided molecular identification of root-tip mantle mycelia provides strong indications of ectomycorrhizal associations in two species of Sistotrema (Basidiomycota).

scientific article
Fungal associates of Pyrola rotundifolia, a mixotrophic Ericaceae, from two Estonian boreal forests

scientific article
PlutoF—a Web Based Workbench for Ecological and Taxonomic Research, with an Online Implementation for Fungal ITS Sequences.

scientific article
Unlocking biodiversity data: Prioritization and filling the gaps in biodiversity observation data in Europe

article by Florian Wetzel et al published May 2018 in Biological Conservation
Diversity and community composition of ectomycorrhizal fungi in a dry deciduous dipterocarp forest in Thailand

article
Evolution of nutritional modes of Ceratobasidiaceae (Cantharellales, Basidiomycota) as revealed from publicly available ITS sequences

scientific article published in 2013
Global biogeography of Alnus‐associated Frankia actinobacteria

scientific article published on August 13, 2014

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