List of works - Hongzhan Huang

UniProt: the Universal Protein knowledgebase

scientific article from 2004

The Universal Protein Resource (UniProt)

scientific article

The InterPro protein families database: the classification resource after 15 years

scientific article

UniRef: comprehensive and non-redundant UniProt reference clusters

scientific article (publication date: 15 May 2007)

InterPro in 2017-beyond protein family and domain annotations

scientific article

The Universal Protein Resource (UniProt): an expanding universe of protein information

scientific article

UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches

scientific article

The Protein Information Resource

scientific article

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

article by Alex Mitchell et al published 6 November 2018 in Nucleic Acids Research

PIRSF: family classification system at the Protein Information Resource

scientific article

Proteomic and bioinformatic characterization of the biogenesis and function of melanosomes

scientific article

The Protein Information Resource: an integrated public resource of functional annotation of proteins

scientific article

The Protein Ontology: a structured representation of protein forms and complexes

scientific article

Software for pre-processing Illumina next-generation sequencing short read sequences.

scientific article

Representative proteomes: a stable, scalable and unbiased proteome set for sequence analysis and functional annotation.

scientific article

The iProClass integrated database for protein functional analysis

scientific article published on February 2004

Protein Ontology: a controlled structured network of protein entities

scientific article

Protein family classification and functional annotation

scientific article

Protein Bioinformatics Databases and Resources.

scientific article

A comprehensive protein-centric ID mapping service for molecular data integration

scientific article

Transcription factors and genetic circuits orchestrating the complex, multilayered response of Clostridium acetobutylicum to butanol and butyrate stress.

scientific article

A fast Peptide Match service for UniProt Knowledgebase

scientific article published on 19 August 2013

Comparative Bioinformatics Analyses and Profiling of Lysosome-Related Organelle Proteomes

scientific article

Community annotation and bioinformatics workforce development in concert--Little Skate Genome Annotation Workshops and Jamborees

scientific article

PIRSF family classification system for protein functional and evolutionary analysis

scientific article published on January 2006

Integration of bioinformatics resources for functional analysis of gene expression and proteomic data

scientific article

Proteomic analysis of pathways involved in estrogen-induced growth and apoptosis of breast cancer cells.

scientific article

Elevated FGF21 secretion, PGC-1α and ketogenic enzyme expression are hallmarks of iron-sulfur cluster depletion in human skeletal muscle

scientific article published on 13 August 2013

Protein Ontology (PRO): enhancing and scaling up the representation of protein entities

scientific article

RNA-Seq Analysis of Abdominal Fat in Genetically Fat and Lean Chickens Highlights a Divergence in Expression of Genes Controlling Adiposity, Hemostasis, and Lipid Metabolism

scientific article

RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information

scientific article

iProClass: an integrated database of protein family, function and structure information

scientific article

Omics-based molecular target and biomarker identification.

scientific article published on January 2011

Phylogenomic analysis of marine Roseobacters

scientific article

Structural and functional studies of S-adenosyl-L-methionine binding proteins: a ligand-centric approach

scientific article

Integrated Bioinformatics for Radiation-Induced Pathway Analysis from Proteomics and Microarray Data

scientific article

iPTMnet: an integrated resource for protein post-translational modification network discovery

scientific article

Systems integration of biodefense omics data for analysis of pathogen-host interactions and identification of potential targets

scientific article (publication date: 25 September 2009)

iPTMnet: Integrative Bioinformatics for Studying PTM Networks

scientific article published on January 2017

Construction of protein phosphorylation networks by data mining, text mining and ontology integration: analysis of the spindle checkpoint

scientific article

Protein Bioinformatics Infrastructure for the Integration and Analysis of Multiple High-Throughput "omics" Data

scientific article

Protein bioinformatics databases and resources

scientific article published on 01 January 2011

Use of the protein ontology for multi-faceted analysis of biological processes: a case study of the spindle checkpoint

scientific article published on 26 April 2013

Structure-guided rule-based annotation of protein functional sites in UniProt knowledgebase

scientific article

A framework for biomedical figure segmentation towards image-based document retrieval

scientific article

UniProt genomic mapping for deciphering functional effects of missense variants.

scientific article published on 3 April 2019

An integrated approach for analyzing clinical genomic variant data from next-generation sequencing.

scientific article

Transcriptional profiling of liver during the critical embryo-to-hatchling transition period in the chicken (Gallus gallus)

scientific article published on 21 September 2018

Protein-centric data integration for functional analysis of comparative proteomics data

scientific article

Analysis of Protein Phosphorylation and Its Functional Impact on Protein-Protein Interactions via Text Mining of the Scientific Literature

scientific article published on January 2017

List of works by Hongzhan Huang

UniProt: the Universal Protein knowledgebase

The Universal Protein Resource (UniProt)

The InterPro protein families database: the classification resource after 15 years

UniRef: comprehensive and non-redundant UniProt reference clusters

InterPro in 2017-beyond protein family and domain annotations

The Universal Protein Resource (UniProt): an expanding universe of protein information

UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches

The Protein Information Resource

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

PIRSF: family classification system at the Protein Information Resource

Proteomic and bioinformatic characterization of the biogenesis and function of melanosomes

The Protein Information Resource: an integrated public resource of functional annotation of proteins

The Protein Ontology: a structured representation of protein forms and complexes

Software for pre-processing Illumina next-generation sequencing short read sequences.

Representative proteomes: a stable, scalable and unbiased proteome set for sequence analysis and functional annotation.

The iProClass integrated database for protein functional analysis

Protein Ontology: a controlled structured network of protein entities

Protein family classification and functional annotation

Protein Bioinformatics Databases and Resources.

A comprehensive protein-centric ID mapping service for molecular data integration

Transcription factors and genetic circuits orchestrating the complex, multilayered response of Clostridium acetobutylicum to butanol and butyrate stress.

A fast Peptide Match service for UniProt Knowledgebase

Comparative Bioinformatics Analyses and Profiling of Lysosome-Related Organelle Proteomes

Community annotation and bioinformatics workforce development in concert--Little Skate Genome Annotation Workshops and Jamborees

PIRSF family classification system for protein functional and evolutionary analysis

Integration of bioinformatics resources for functional analysis of gene expression and proteomic data

Proteomic analysis of pathways involved in estrogen-induced growth and apoptosis of breast cancer cells.

Elevated FGF21 secretion, PGC-1α and ketogenic enzyme expression are hallmarks of iron-sulfur cluster depletion in human skeletal muscle

Protein Ontology (PRO): enhancing and scaling up the representation of protein entities

RNA-Seq Analysis of Abdominal Fat in Genetically Fat and Lean Chickens Highlights a Divergence in Expression of Genes Controlling Adiposity, Hemostasis, and Lipid Metabolism

RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information

iProClass: an integrated database of protein family, function and structure information

Omics-based molecular target and biomarker identification.

Phylogenomic analysis of marine Roseobacters

Structural and functional studies of S-adenosyl-L-methionine binding proteins: a ligand-centric approach

Integrated Bioinformatics for Radiation-Induced Pathway Analysis from Proteomics and Microarray Data

iPTMnet: an integrated resource for protein post-translational modification network discovery

Systems integration of biodefense omics data for analysis of pathogen-host interactions and identification of potential targets

iPTMnet: Integrative Bioinformatics for Studying PTM Networks

Construction of protein phosphorylation networks by data mining, text mining and ontology integration: analysis of the spindle checkpoint

Protein Bioinformatics Infrastructure for the Integration and Analysis of Multiple High-Throughput "omics" Data

Protein bioinformatics databases and resources

Use of the protein ontology for multi-faceted analysis of biological processes: a case study of the spindle checkpoint

Structure-guided rule-based annotation of protein functional sites in UniProt knowledgebase

A framework for biomedical figure segmentation towards image-based document retrieval

UniProt genomic mapping for deciphering functional effects of missense variants.

An integrated approach for analyzing clinical genomic variant data from next-generation sequencing.

Transcriptional profiling of liver during the critical embryo-to-hatchling transition period in the chicken (Gallus gallus)

Protein-centric data integration for functional analysis of comparative proteomics data

Analysis of Protein Phosphorylation and Its Functional Impact on Protein-Protein Interactions via Text Mining of the Scientific Literature